Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Colletotrichum

ABSTRACT: Colletotrichum Genome sequencing and assembly

PROVIDER: PRJNA728692 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR21397800_1.fastq.gz	Fastqsanger.gz
	SRR21397800_2.fastq.gz	Fastqsanger.gz
	SRR21397801_1.fastq.gz	Fastqsanger.gz
	SRR21397801_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense [RNAi_mutants_smallRNA]

Project description:Here we describe the identification and regulation of a novel dsRNA virus in Colletotrichum higginsianum. High throughput sequencing of small RNAs and strand-specific RNA-seq was performed on single gene knock-out mutants created for each RNAi component gene: rdr1, rdr2, rdr3, dcl1, dcl2, ago1, and ago2, and the double mutant: ∆dcl1∆dcl2. De novo assembly of the ∆dcl1 RNA-seq data identified two contigs that represented the forward and reverse strands of an uncharacterized dsRNA virus, designated here as Colletotrichum higginsianum non-segmented dsRNA virus 1 (ChNRV1). We found increased presence of the viral RNA in the RNA-seq datasets of the ∆dcl1, ∆dcl1dcl2, and ∆ago1 strains, suggesting that these genes are required for control of the virus. We show that viral small RNAs co-immunoprecipitate with a 6xFLAG-3xHIS-tagged AGO1 protein by sequencing the small RNAs from immunoprecipitated fractions. Additionally, analyses of the small RNA datasets from the RNAi mutants revealed control of the virus through small RNA-mediated silencing required both AGO1 and DCL1.

2016-04-28 | GSE62705 | GEO

Colletotrichum

Project description:Colletotrichum Genome sequencing and assembly

| PRJNA504379 | ENA

Colletotrichum

Project description:Colletotrichum Genome sequencing and assembly

| PRJNA613862 | ENA

Analysis of Colletotrichum orbiculare infection of N. benthamiana

Project description:Species from the genus Colletotrichum are the causal agents of anthracnose which contribute to significant losses to the production of commercially grown crops. The genomes of Colletotrichum orbiculare, which infects cucurbits and Nicotiana benthamiana, as well as Colletotrichum gloeosporioides, which infects a wide range of fruits and vegetables, were sequenced. A custom microarray was designed for Colletotrichum orbiculare and used to assess gene expression during infection of Nicotiana benthamiana. Gene expression of Colletotrichum orbiculare growing on its host Nicotiana benthamiana was assessed at 24 hours post inoculation, 3 days post inoculation and 7 days post inoculation. Mycelia growing in vitro and ungerminated conidia were used as controls. Three replicates were performed for each time point.

2013-04-09 | GSE39714 | GEO

The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense [RNAi_mutants_RNAseq]

2016-04-28 | GSE62707 | GEO

The RNAi machinery in Colletotrichum higginsianum has a role in antiviral defense [AGO_IP_smallRNA]

2016-04-28 | GSE62706 | GEO

Next-generation sequencing analysis of ginseng transcriptomes in response to Colletotrichum panacicola infection

Project description:Next-generation sequencing (NGS) was performed to identify genes changed in ginseng upon Colletotrichum panacicola infection. The goal of the work is to find interesting genes involved in ginseng in response to fungi induction. The object is to reveal the molecular mechanism of ginseng disease development caused by Colletotrichum panacicola.

2023-08-08 | GSE226837 | GEO

Colletotrichum

Project description:Genome of four Colletotrichum Genome sequencing and assembly

| PRJNA898668 | ENA

Colletotrichum lindemuthianum

Project description:Colletotrichum lindemuthianum Genome sequencing and assembly

| PRJNA325493 | ENA

Colletotrichum australisinense

Project description:Colletotrichum australisinense Genome sequencing and assembly

| PRJNA597926 | ENA