Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of dysregulated transcripts in apob-1(RNAi) apob-2(RNAi) planarians

ABSTRACT: Identification of dysregulated transcripts in apob-1(RNAi) apob-2(RNAi) planarians

PROVIDER: PRJNA728883 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14494447_1.fastq.gz	Fastqsanger.gz
	SRR14494447_2.fastq.gz	Fastqsanger.gz
	SRR14494448_1.fastq.gz	Fastqsanger.gz
	SRR14494448_2.fastq.gz	Fastqsanger.gz
	SRR14494449_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Identification of dysregulated transcripts in apob-1(RNAi);apob-2(RNAi) planarians

Project description:ApoB-1 and ApoB-2 are intestine-enriched regulators of lipoprotein secretion in planarians. The goal of this study was to identify differentially expressed transcripts in uninjured apob-1(RNAi);apob-2(RNAi) double knockdown planarians relative to egfp(RNAi) control animals.

2022-05-24 | GSE174227 | GEO

Identification of dysregulated transcripts in nkx2.2(RNAi) planarians.

Project description:Identification of dysregulated transcripts in nkx2.2(RNAi) planarians.

| PRJNA728884 | ENA

Identification of dysregulated transcripts in egr-2(RNAi) planarians

Project description:Identification of dysregulated transcripts in egr-2(RNAi) planarians

| PRJNA943428 | ENA

Identification of dysregulated transcripts in nkx2.2(RNAi) planarians.

Project description:Nkx2.2 is an intestine-enriched transcription factor required for regeneration in planarians. The goal of this study was to identify differentially expressed transcripts in uninjured nkx2.2(RNAi) planarians.

2022-05-24 | GSE174228 | GEO

Identification of dysregulated transcripts in planarians

Project description:Identification of dysregulated transcripts in planarians

| PRJNA728927 | ENA

Identification of dysregulated transcripts in egr-2(RNAi) planarians

Project description:egr-2 is an injury-responsive gene that is upregulated in the anterior of planarian tail fragments and required for intestinal remodeling. The goal of this study was to identify differentially expressed transcripts in the anterior region of egr-2(RNAi) tail fragments relative to egfp(RNAi) control fragments.

2023-03-15 | GSE227155 | GEO

Transcriptome of cct3A(RNAi) planarians at 72 hours of regeneration

Project description:We performed RNA-seq of whole starved cct3A(RNAi) planarians and controls at 72hR.

2021-04-26 | GSE134013 | GEO

Transcriptional profiling of Schmidtea mediterranea planarians (smed-runt-1 RNAi vs. control RNAi)

Project description:Transcriptional profiling of Schmidtea mediterranea planarians that have been subjected to 2 weeks of runt-1 or control RNAi, amputated and RNA was directly collected at 5min, 9h, and 24h, or neoblasts (X1) were isolated from 9h wounded animals and subsequently RNA was extracted

2012-04-30 | GSE36869 | GEO

Transcriptional profiling of Schmidtea mediterranea planarians (smed-runt-1 RNAi vs. control RNAi)

2012-04-29 | E-GEOD-36869 | biostudies-arrayexpress

RNAseq in whole freshwater planarians, Schmidtea mediterranea, following RNAi of the transcription factors lhx1/5-1 and pitx.

Project description:Freshwater planarians can be used as a model to investigate neuronal function and maintenance in adults in vivo. We knocked down expression for 2 transcription factors, then sequenced resulting animals to examine transcriptional changes that may have occurred. There are 3 triplicated conditions: control(RNAi) using the unc22 gene from C. elegans, lhx1/5-1(RNAi), and pitx(RNAi). Worms were fed RNAi for each gene 5 times over 12 days then were collected 12 days later. Approximately 50 million single-end reads were performed on each sample.

2013-05-31 | E-GEOD-47348 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data