Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MicroRNA-seq in circCDYL probe and NC probe

ABSTRACT: microRNA-seq in circCDYL probe and NC probe

PROVIDER: PRJNA730505 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14567268.fastq.gz	Fastqsanger.gz
	SRR14567269.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

microRNA-seq in circCDYL probe and NC probe

Project description:CircRNA pull-down was performed as previously reported. Briefly, SK-BR-3 was fixed with 1% formaldehyde and lysed by co-IP buffer and the cluster was sonicated. CircCDYL-specific and NC biotinylated probes were added to mixture tobind circCDYL. Next, C1 streptavidin magnetic beads was added to pull down circCDYL and circCDYL-binding RNA. Finally, total RNA was extracted from the magnetic beads and followed by qRT-PCR detection of circCDYL and miR-92b-3p.

2021-05-18 | GSE174541 | GEO

Project description:NC Metagenome

| PRJNA894814 | ENA

Microarray probe design

Project description:Microarray probe design

| PRJNA116759 | ENA

RNA-seq timeline of fibroblast to neuron conversion using traditional NC media and NC+ZPAK media

Project description:Bulk RNA was extracted via trizol at Fibroblasts stage, 5 days, 10 days, 15 days, and 20 days of fibroblast to neuron conversion using traditional NC media, or NC media supplemented with ZM336372, pyrintegrin, AZ960, and KC7F2

2019-05-23 | E-MTAB-7250 | biostudies-arrayexpress

Altered expression of microRNAs in Tongue squamous cell carcinoma (TSCC) and matched nonmalignant tissues (NC)

Project description:Investigation of microRNA expression level changes in 4 paired of Tongue Squamous Cell Carcinoma specimens miRNA profiling: TSCC vs NC

2013-10-30 | E-GEOD-51829 | biostudies-arrayexpress

microRNA expression in Tim-3 knockdown RAW264.7 cell

2016-01-14 | GSE76839 | GEO

Profiling of gene expression signatures for human corneal epithelial cell after transfection with microRNA-184 or NC.

Project description:Our previous study identified that microRNA-184 as one of the most highly expressed miRNAs in the corneal epithelium. To gain insight into the underlying mechanisms of miR-184 modulation of corneal epithelial cell proliferation and migration, we probed for its gene targets by microarray analysis . HCECs transfected with miR-184 or a NC for 48 h were harvested and a gene microarray evaluated transcriptome expression patterns. Ectopic miR-184 expression resulted in numerous genes undergoing either upregulation or downregulation. Since miRNAs mediate biological functions by impeding expression of their target genes in mammals, a total of 901 differentially downregulated genes (Foldchange ≤ 0.667) were firstly selected.

2020-08-11 | GSE148289 | GEO

CLIP-seq analysis of NC-RNA interactions in wild-type and eccentric particles

Project description:Nucleocapsid (NC) CLIP-seq experiments were conducted on wild-type and eccentric HIV-1 virions generated in the presence of allosteric integrase inhibitor, BI-B2.

2017-06-15 | GSE100018 | GEO

CDKN2A-specific probe captured RNA-sequencing (RNACap-Seq) (HEK293T MCF7)

Project description:CDKN2A-specific probe captured RNA-sequencing (RNACap-Seq) (HEK293T MCF7)

| PRJNA526737 | ENA

microRNA expression in Tim-3 knockdown RAW264.7 cell

Project description:RAW264.7 cell was stably transfected with Tim-3 siRNA(SI) or negative control(NC) and were analyzed for microRNA expression Differerently expressed microRNA in Tim-3 knockdown RAW264.7 cells were summarized and were used for further analysis RAW264.7 cells stably transfected with Tim-3 siRNA(SI) or negative control(NC) and were used to collect microRNA without any other treatment

2016-01-14 | E-GEOD-76839 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data