Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Development and genetics of red coloration in the zebrafish relative Danio albolineatus

ABSTRACT: Development and genetics of red coloration in the zebrafish relative Danio albolineatus

PROVIDER: PRJNA731174 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14594971.fastq.gz	Fastqsanger.gz
	SRR14594972.fastq.gz	Fastqsanger.gz
	SRR14594973.fastq.gz	Fastqsanger.gz
	SRR14594974.fastq.gz	Fastqsanger.gz
	SRR14594975.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Development and genetics of red coloration in the zebrafish relative Danio albolineatus

Project description:Animal pigment patterns play important roles in behavior and, in many species, red coloration serves as an honest signal of individual quality in mate choice. Among Danio fishes, some species develop erythrophores, pigment cells that contain red ketocarotenoids, whereas other species, like zebrafish (D. rerio) only have yellow xanthophores. Here, we use pearl danio (D. albolineatus) to assess the developmental origin of erythrophores and their mechanisms of differentiation. We show that erythrophores in the fin of D. albolineatus share a common progenitor with xanthophores and maintain plasticity in cell fate even after differentiation. We further identify the predominant ketocarotenoids that confer red coloration to erythrophores and use reverse genetics to pinpoint genes required for the differentiation and maintenance of these cells. Our analyses are a first step towards defining the mechanisms underlying the development of erythrophore-mediated red coloration in Danio and reveal striking parallels with the mechanism of red coloration in birds.

2021-05-20 | GSE174713 | GEO

Danio albolineatus

Project description:Danio albolineatus overview

| PRJNA693916 | ENA

Danio Species Sequencing Project - Danio albolineatus

Project description:Danio Species Sequencing Project - Danio albolineatus

| PRJEB2227 | ENA

Development and genetics of red coloration in the zebrafish relative Danio albolineatus.

Project description:Animal pigment patterns play important roles in behavior and, in many species, red coloration serves as an honest signal of individual quality in mate choice. Among Danio fishes, some species develop erythrophores, pigment cells that contain red ketocarotenoids, whereas other species, like zebrafish (D. rerio) only have yellow xanthophores. Here, we use pearl danio (D. albolineatus) to assess the developmental origin of erythrophores and their mechanisms of differentiation. We show that erythrophores in the fin of D. albolineatus share a common progenitor with xanthophores and maintain plasticity in cell fate even after differentiation. We further identify the predominant ketocarotenoids that confer red coloration to erythrophores and use reverse genetics to pinpoint genes required for the differentiation and maintenance of these cells. Our analyses are a first step toward defining the mechanisms underlying the development of erythrophore-mediated red coloration in Danio and reveal striking parallels with the mechanism of red coloration in birds.

| S-EPMC8416024 | biostudies-literature

Lepidocolaptes albolineatus

Project description:Lepidocolaptes albolineatus

| PRJNA960147 | ENA

Grapsus albolineatus

Project description:Grapsus albolineatus overview

| PRJNA786043 | ENA

RNA-Seq of Danionine species

Project description:Tissues specific transcriptomes of Danio rerio, Danio albolineatus and Danio aesculapii Brain, Liver and Gonads.

2018-11-22 | E-MTAB-7476 | biostudies-arrayexpress

Grapsus albolineatus

Project description:Grapsus albolineatus Raw sequence reads of mitochondrial genome

| PRJNA785768 | ENA

fDanAlb1

Project description:Danio albolineatus (pearl danio)

| PRJEB38566 | ENA

Transcriptome analysis of apple peel samples at different time points in the process of changing from green to red under light conditions after unbagging

Project description:Purpose:The red coloration of apple (Malus × domestica Borkh.) is due to the accumulation of anthocyanins in the fruit peel. Light is essential for anthocyanin biosynthesis in apple.Apple peel can quickly turn red under light conditions after unbagging. Therefore, the implementation of transcriptome sequencing to find genes that promote anthocyanin accumulation in response to light signals is necessary to clarify the mechanism of light-induced anthocyanin accumulation in apple peel.

2021-10-02 | GSE185089 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data