Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Low-coverage reduced representation sequencing reveals subtle population genetic structure in Aldabra giant tortoises

PROVIDER: PRJNA731672 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14612000.fastq.gz	Fastqsanger.gz
	SRR14612001.fastq.gz	Fastqsanger.gz
	SRR14612002.fastq.gz	Fastqsanger.gz
	SRR14612003.fastq.gz	Fastqsanger.gz
	SRR14611971.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 33

Similar Datasets

Project description:Population Structure in Alabama Gopher Tortoises

| PRJNA947629 | ENA

Project description:Contrasting whole-genome and reduced representation sequencing pipelines for population demographic inference - high coverage genomes

| PRJNA909333 | ENA

Western Indian Ocean giant tortoises

Project description:Western Indian Ocean giant tortoises

| PRJEB51299 | ENA

Project description:Aldabra Giant Tortoises Gut Microbiome

| PRJNA1076075 | ENA

Project description:Schistosoma haematobium population genomics (low coverage)

| PRJNA508633 | ENA

Project description:Whole genome sequencing of Galapagos giant tortoises

| PRJNA761229 | ENA

Genome-wide DNA methylation profiling of mouse liver

Project description:To determine whether differences between background strains or housing conditions altered the hepatic methylome, We report the generation and analysis of genome-wide DNA methylation profiles at nucleotide resolution in mouse liver from two male mice on a mixed background (mixed-1, mixed-2) and two males on a pure Black-6 (B6-1, B62) background. Using Enhanced high-throughput Reduced Representation Bisulfite Sequencing (ERRBS), we enriched CpG islands in mouse liver, and covered a representative sampling of conserved non-coding elements, transposons and other genomic features,Â for mouse liver. We found that the total CpG methylation of each methylome was strikingly similar among the 4 mouse liver samples from two different genetic backgrounds. Analysis of all CpG sites with at least 10x coverage showed a bimodal distribution of methylation, with all samples having 25% of hypermethylated CpG sites and 60% as hypomethylated CpG sites. Given the high percent of genome coverage and robust depth at single nucleotide level, these datasets provide a resource for investigation into changes in DNA methylation patterns in liver disease, tumorigenesis and regeneration. Ehanced reduced representation bisulfite sequencing (MspI 70~320bp size fraction) of liver tissue

2016-06-13 | E-GEOD-80761 | biostudies-arrayexpress

Mus musculus

Project description:Reduced representation bisulfite sequencing

| PRJNA347548 | ENA

Peromyscus

Project description:Peromyscus Reduced representation (ddRADseq)

| PRJNA186607 | ENA

Project description:Reduced-Representation Genome Sequencing

| PRJNA777040 | ENA