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PacBio Iso-Seq transcriptome for California Valley Oak, Quercus lobata (SW786)

ABSTRACT: PacBio Iso-Seq transcriptome for California Valley Oak, Quercus lobata (SW786)

PROVIDER: PRJNA731858 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14613162.fastq.gz	Fastqsanger.gz
	SRR14613163.fastq.gz	Fastqsanger.gz
	SRR14613164.fastq.gz	Fastqsanger.gz

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PacBio Iso-Seq transcriptome for California Valley Oak, Quercus lobata (SW786)

Project description:Iso-Seq "full length" transcript sequences were used as one of many guides informing gene model annotation of the Valley Oak genome sequence.

2021-05-22 | GSE174827 | GEO

Illumina RNA-seq for bud, leaf and stem of California Valley Oak, Quercus lobata (SW786)

Project description:STAR aligned RNA-seq reads were used as one of many guides informing gene model annotation of the Valley Oak genome sequence.

2021-05-22 | GSE174828 | GEO

Whole genome bisulfite sequencing for bud, catkin and leaf of California Valley Oak, Quercus lobata (SW786)

Project description:WGBS sequencing of Valley Oak bud, catkin and leaf tissues

2021-05-22 | GSE174826 | GEO

Foraging patterns of acorn woodpeckers (Melanerpes formicivorus) on valley oak (Quercus lobata Nee) in two California oak savanna-woodlands.

Project description:Landscape characteristics and social behavior can affect the foraging patterns of seed-dependent animals. We examine the movement of acorns from valley oak (Quercus lobata) trees to granaries maintained by acorn woodpeckers (Melanerpes formicivorus) in two California oak savanna-woodlands differing in the distribution of Q. lobata within each site. In 2004, we sampled Q. lobata acorns from 16 granaries at Sedgwick Reserve in Santa Barbara County and 18 granaries at Hastings Reserve in Monterey County. Sedgwick has lower site-wide density of Q. lobata than Hastings as well as different frequencies of other Quercus species common to both sites. We found acorn woodpeckers foraged from fewer Q. lobata seed source trees (K(g) = 4.1 ± 0.5) at Sedgwick than at Hastings (K(g) = 7.6 ± 0.6) and from fewer effective seed sources (N(em)* = 2.00 and 5.78, respectively). The differences between sites are due to a greater number of incidental seed sources used per granary at Hastings than at Sedgwick. We also found very low levels of seed source sharing between adjacent granaries, indicating that territoriality is strong at both sites and that each social group forages on its own subset of trees. We discovered an interesting spatial pattern in the location of granaries. At Sedgwick, acorn woodpeckers situated their granaries within areas of higher-than-average tree density, while at Hastings, they placed them within areas of lower-than-average tree density, with the outcome that granaries at the two sites were located in areas of similar valley oak density. Our results illustrate that landscape characteristics might influence the number of trees visited by acorn woodpeckers and the locations of territories, while woodpecker social behavior, such as territoriality, shapes which trees are visited and whether they are shared with other social groups.

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Illumina RNA-seq for bud, leaf and stem of California Valley Oak, Quercus lobata (SW786)

Project description:Illumina RNA-seq for bud, leaf and stem of California Valley Oak, Quercus lobata (SW786)

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Whole genome bisulfite sequencing for bud, catkin and leaf of California Valley Oak, Quercus lobata (SW786)

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