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Next Generation Sequencing Facilitates Quantitative Analysis of young nand aged control and Acsl6-/- Transcriptomes

ABSTRACT: Next Generation Sequencing Facilitates Quantitative Analysis of young nand aged control and Acsl6-/- Transcriptomes

PROVIDER: PRJNA732919 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14661753.fastq.gz	Fastqsanger.gz
	SRR14661754.fastq.gz	Fastqsanger.gz
	SRR14661755.fastq.gz	Fastqsanger.gz
	SRR14661756.fastq.gz	Fastqsanger.gz
	SRR14661757.fastq.gz	Fastqsanger.gz

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Next Generation Sequencing Facilitates Quantitative Analysis of young nand aged control and Acsl6-/- Transcriptomes

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived cerebellar transcriptome profiling (RNA-seq) to determine age-relatined impact of acsl6 deficiency on brain transcriptome profiles. Methods: Cerebellar mRNA profiles of 2-month and 18-month control and long-chain acyl-coa synthetase 6-knockout (Acsl6) mice were generated and sent to Genewiz for RNAseq analysis Results: Using an optimized data analysis workflow, we mapped about 3,451,694,754 sequence reads total and ~25-45 million reads per sample of which ~98% were mapped to the mouse genome. Conclusions: Our study represents the first detailed analysis of cerebellar transcriptomes of Acsl6 knockout mice, compated to controls, at young and old ages.

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Hippocampal gene expression in aged and young HSD1 knockout mice

Project description:Mice deficient in the glucocorticoid-regenerating enzyme 11Î²-HSD1 resist age-related spatial memory impairment. To investigate the mechanisms/pathways involved, we used microarrays to identify differentially expressed hippocampal genes that associate with cognitive ageing and 11Î²-HSD1. Aged wild-type mice were separated into memory-impaired and unimpaired relative to young controls according to their performance in the Y-maze. All individual aged 11Î²-HSD1-deficient mice showed intact spatial memory. The majority of differentially expressed hippocampal genes were increased with ageing (e.g. immune/inflammatory response genes) with no genotype differences. However, the neuronal-specific transcription factor, Npas4 and immediate early gene, Arc were reduced (relative to young) in the hippocampus of memory-impaired but not unimpaired aged wild-type or aged 11Î²-HSD1-deficient mice. Quantitative RT-PCR and in situ hybridization confirmed reduced Npas4 and Arc mRNA expression in memory-impaired aged wild-type mice. These findings suggest that 11Î²-HSD1 may contribute to the decline in Npas4 and Arc mRNA levels associated with memory impairment during ageing, and that decreased activity of synaptic plasticity pathways involving Npas4 and Arc may, in part, underlie the memory deficits seen in cognitively-impaired aged wild-type mice. 20 samples, 5 groups of 4 biological replicates each. Young, Wild Type animals are overall controls

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Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Young and Old muscle Transcriptomes

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