Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression data from Arabidopsis plants overexpressing CLE３ in roots

ABSTRACT: Expression data from Arabidopsis plants overexpressing CLE３ in roots

PROVIDER: PRJNA734776 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Expression data from Arabidopsis plants overexpressing CLE2 in roots

Project description:Expression data from Arabidopsis plants overexpressing CLE2 in roots

| PRJNA627129 | ENA

Expression data from Arabidopsis plants overexpressing CLE３ in roots

Project description:Plant hormones and small secretory peptides often function as environmental stress mediators. Some recent reports indicate that small secretory peptides, such as CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE), also function as mediators of environmental stimuli. CLE３ is induced in roots by defense elicitor treatment. Plants without functional CLE3 showed compromized defense gene responses in shoots when plant roots were treated with NaSA. Here, we identified specific genes downstream of CLE3 in roots and shoots with transformed Arabidopsis plants.

2021-09-01 | GSE176064 | GEO

Expression data from Arabidopsis plants overexpressing CLE2 in roots

Project description:Plant hormones and small secretory peptides often function as environmental stress mediators. Some recent reports indicate that small secretory peptides, such as CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE), also function as mediators of environmental stimuli. CLE2 is induced in roots by light depriviation. Plants without functional CLE2 showed a chlorosis phenotype when grown under shade. Here, we identified specific genes downstream of CLE2 in roots and shoots with transformed Arabidopsis plants.

2020-12-31 | GSE149015 | GEO

Expression data from Arabidopsis shoots and roots

Project description:Regulation of genes in shoots and roots and Arabidopsis in response to Zn-deficiency in wild-type and hma2 hma4 mutants plants We used microarrays to determine co-regulated genes in the roots of Zn deficient wild-type plants with hma2 hma4 plants from control conditions. These co-regulated genes are candidates for regulation by a systemic signal

2018-05-01 | GSE111443 | GEO

Arabidopsis transcriptome microarray from virus infected roots. Functional Genomic study in virus-infected plants.

Project description:au07-02_trv - arabidopsis transcriptome microarray from virus infected roots. - mRNA expression profile in virus-infected Arabidopsis. - Arabidopsis miRNA/transcriptome microarray from virus infected roots of plants. Keywords: normal vs disease comparison

2009-04-10 | GSE15558 | GEO

Analysis of NPC48 overexpressing in Arabidopsis roots

Project description:Analysis of NPC48 overexpressing in Arabidopsis roots

| PRJNA634360 | ENA

Transcription profiling by array of Arabidopsis transgenic plants overexpressing YFP and VND7-YFP

Project description:The Arabidopsis thaliana NAC domain transcription factor, VASCULAR-RELATED NAC-DOMAIN7 (VND7), acts as a master regulator for differentiation of xylem vessels. In order to identify a set of genes regulated by VND7, we carried out a microarray experiment with the Arabidopsis full-genome GeneChip array ATH1 (Affymetrix) for transgenic Arabidopsis roots overexpressing VND7. Experiment Overall Design: Total RNAs were isolated from roots of 5-day-old seedling of transgenic plants overexpressing YFP and VND7-YFP under control of Cauliflower mosaic virus 35S promoter. Three independent biological replicates were performed for each sample.

2010-04-30 | E-MEXP-1876 | biostudies-arrayexpress

Expression data roots of Arabidopsis plants inoculated with Verticillium longisporum

Project description:Identification of genes differentially expressed in roots of Arabidopsis Col-0 and ndr1-1 mutants 48 h post inoculation with the fungal pathogen Verticillium longisporum.

2014-11-20 | GSE62537 | GEO

miR396 overexpression in Arabidopsis thaliana roots

Project description:Analysis of gene expression in the meristematic zone of Arabidopsis roots overexpressing miR396

2015-11-18 | GSE58807 | GEO

Expression data roots of Arabidopsis plants inoculated with Verticillium longisporum

Project description:Identification of genes differentially expressed in roots of Arabidopsis Col-0 and ndr1-1 mutants 48 h post inoculation with the fungal pathogen Verticillium longisporum. Arabidopsis Col-0 and ndr1-1 seeds were grown in petri dishes with liquid MS medium supplemented with 0.2% sucrose. After two weeks on a horizontal shaker (40 rpm), plants were rinsed twice in sterile distilled water and transferred to liquid 0.5xMS medium without sucrose, supplemented with 200 conidia ml-1 of V. longisporum isolate VL1 (CBS110220). Control plants were grown in 0.5x MS only. At 48 hours post inoculation, materials were harvested in biological replicates (>50 plant roots) and immediately frozen in liquid nitrogen. RNA was extracted with Aurum Total RNA Mini Kit (Bio-Rad) and hybridized to the Arabidopsis ATH1 Genome Array at the DNAVision facility (Gosselies, Belgium). Microarray assays were performed with triplicate biological root samples. Normalization of the microarray data was performed using the Robust Multichip Average (RMA) method as implemented by the “quantile normalization” function in the Bioconductor 1.3 software.

2014-11-20 | E-GEOD-62537 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data