Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sus scrofa strain:Iberian

ABSTRACT: Sus scrofa strain: Iberian

PROVIDER: PRJNA73723 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR350917_1.fastq.gz	Fastqsanger.gz
	SRR350917_2.fastq.gz	Fastqsanger.gz
	SRR350918_1.fastq.gz	Fastqsanger.gz
	SRR350918_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Sus scrofa strain:Iberian inbred lines

Project description:Sus scrofa strain:Iberian inbred lines Genome sequencing

| PRJNA200361 | ENA

Sus scrofa strain:Iberian x Landrace

Project description:Sus scrofa strain:Iberian x Landrace Transcriptome or Gene expression

| PRJNA240057 | ENA

Sus scrofa domesticus strain:Guadyerbas Iberian pig breed

Project description:Sus scrofa domesticus strain:Guadyerbas Iberian pig breed Genome sequencing

| PRJNA190683 | ENA

Total RNA sequencing in multiple Sus Scrofa tissues reveals novel long non-coding RNAs functioning in skeletal muscle development

Project description:Long non-coding RNAs (lncRNAs) play important roles in diverse biological processes. However, the landscape of lncRNAs is largely unclear in Sus scrofa. Here we performed stranded RNA-seq on total RNA libraries from over 100 samples of Sus scrofa tissues. We identified 10,813 lncRNAs in Sus scrofa, of which 9,075 are novel. 57% of these lncRNAs were conserved in both human and mouse. These conserved lncRNAs tend to be more tissue-specific than pig-specific lncRNAs, and enriched in reproducible organs (i.e. testis and ovary). We characterized a group of lncRNAs potentially involved in the skeletal muscle development. One such lncRNA, a homolog of maternally expressed gene 3 (MEG3), was specifically expressed in the skeletal muscle at early developmental stage. And its expression pattern is conserved in pig and mouse. By over-expressing and knocking down MEG3 in mouse myoblast cell lines, we demonstrated its novel function as a myoblast proliferation suppressor.

2017-02-09 | GSE73763 | GEO

Sus scrofa scrofa

Project description:Sus scrofa scrofa Epigenomics

| PRJNA453452 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Metagenome

| PRJNA899839 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Metagenome

| PRJNA521510 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Metagenome

| PRJNA596171 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Genome sequencing

| PRJNA176478 | ENA

Gene expression in non-perfused liver samples from endotoxemic Sus scrofa in context of deoxynivalenol contaminated diets

Project description:It has been proposed that chronic exposure to deoxynivalenol modulates hepatic gene expression and that sensivity to xenobiotics like deoxynivalenol is modulated by inflammation. We used microarrays to evaluate whether chronic deoxynivalenol exposure influences the hepatic gene expression of Sus scrofa in vivo and whether interaction between chronic deoxynivalenol exposure and systemic inflammation occur.

2021-07-19 | GSE171991 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data