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Camellia sinensis

ABSTRACT: Transcriptome analysis of tea leaves after the infection by Pestalotiopsis trachicarpicola.

PROVIDER: PRJNA739263 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14865766_1.fastq.gz	Fastqsanger.gz
	SRR14865766_2.fastq.gz	Fastqsanger.gz
	SRR14865767_1.fastq.gz	Fastqsanger.gz
	SRR14865767_2.fastq.gz	Fastqsanger.gz
	SRR14865768_1.fastq.gz	Fastqsanger.gz

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Camellia sinensis

Project description:Transcriptome analysis of tea leaves after the infection by Pestalotiopsis trachicarpicola.

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Camellia sinensis

Project description:Small RNAs sequence of tea leaves after the infection by Pestalotiopsis trachicarpicola.

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Camellia sinensis strain:ACCC39730

Project description:The sequence of small RNAs originating from tea leaves infected or uninfected by Pestalotiopsis trachicarpicola strain ACCC39730

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Camellia sinensis strain:ACCC39730

Project description:The sequence of messenger RNAs (mRNAs) originating from tea leaves infected or uninfected by Pestalotiopsis trachicarpicola strain ACCC39730

| PRJNA756832 | ENA

Camellia sinensis strain:ACCC39730

Project description:The sequence of long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) originating from tea leaves infected by Pestalotiopsis trachicarpicola strain ACCC39730.

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Camellia sinensis

Project description:Differential gene expression during Exobasidium vexans and Pestalotiopsis theae infection in tea by DNA Microarray

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Identification of conserved and species-specific microRNAs in tea plant (Camellia sinensis) by deep sequencing

Project description:In this study, it is noticeable that 32 tea-specific miRNAs were confirmed on the base of genome survey, using deep sequencing and microarray hybridization, and many miRNAs might associate with secondary metabolites synthesis. Leaves, buds and roots were collected

2016-03-14 | E-GEOD-68267 | biostudies-arrayexpress

Identification of regulatory networks of microRNAs and their targets in immunity to Colletotrichum gloeosporioides in tea plant (Camellia sinensis L.)

Project description:Anthracnose disease is caused by Colletotrichum gloeosporioides, and is common in leaves of the tea plant Camellia sinensis. MicroRNAs (miRNAs) have been known as key modulators of gene expression in defense responses; however, the role of miRNAs in tea plant during defensive responses to C. gloeosporioides remains unexplored. Six miRNA sequencing data sets and two degradome data sets were generated from C. gloeosporioides-inoculated and control tea leaves. A total of 485 conserved and 761 novel miRNAs were identified. Of those, 239 known and 369 novel miRNAs exhibited significantly differential expression under C. gloeosporioides stress. 1134 and 596 mRNAs were identified as targets of 389 and 299 novel and conserved miRNAs by degradome analysis, respectively. The expression levels of twelve miRNAs and their targets were validated by quantitative real-time PCR. The predicted targets of five interesting miRNAs were further validated through 5'RLM-RACE. Furthermore, Gene Ontology and metabolism pathway analysis revealed that most of the target genes were involved in translation, carbohydrate metabolism and signal transduction pathways. This study enriches the resources of defense-responsive miRNAs and their targets in C. sinensis, and thus, provides novel insights into the miRNA-mediated regulatory mechanisms underlying immunity responses to biotic stress in tea plant.

2019-04-10 | GSE119728 | GEO

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [miRNA-seq]

Project description:MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. We sequenced 9 small RNA libraries and 9 RNA-Seq libraries from roots, leaves and flowers tissues. Through comprehensive computational analyses of 9 small RNA profiles, we identified 200 conserved miRNAs of which 138 have not been reported, and 56 novel miRNAs with 33 have not been reported. Nearly, two thousands genes have significantly different expression levels in tissues. In order to identify targets of miRNAs, we sequenced two degradome profiles from leaves and roots, respectively. Totally, more than 3,000 putative targets of conserved miRNAs were identified in both degradome profiles by using the SeqTar algorithm. These results clearly enhanced our understanding about small RNA guided gene regulations in Camellia sinensis.

2020-12-31 | GSE138149 | GEO

an evergrowing tea (Camellia sinensis L.) cultivar

Project description:Tea (Camellia sinensis (L.) O. Kuntze) is an important non-alcoholic commercial beverage crop. Tea tree is a perennial plant, and winter dormancy is its part of biological adaptation to environmental changes. We recently discovered a novel tea tree cultivar that can generate tender shoots in winter, but the regulatory mechanism of this ever-growing tender shoot development in winter is not clear. In this study, we conducted a proteomic analysis for identification of key genes and proteins differentially expressed between the winter and spring tender shoots, to explore the putative regulatory mechanisms and physiological basis of its ever-growing character during winter.

2022-02-23 | PXD008958 | Pride

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