Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lupinus albus cultivar:Amiga

ABSTRACT: Lupinus albus cluster root Temporal RNA-seq with auxin treatment

PROVIDER: PRJNA744398 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15216826_1.fastq.gz	Fastqsanger.gz
	SRR15216826_2.fastq.gz	Fastqsanger.gz
	SRR15216827_1.fastq.gz	Fastqsanger.gz
	SRR15216827_2.fastq.gz	Fastqsanger.gz
	SRR15216828_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Lupinus albus cultivar:AMIGA

Project description:Lupinus albus cluster root spatial RNA-seq

| PRJNA593912 | ENA

Transcriptomics Provide Insights into Early Responses to Sucrose Signaling in Lupinus albus.

Project description:Phosphorus (P) and iron (Fe) deficiency are major limiting factors for plant productivity worldwide. White lupin (Lupinus albus L.) has become a model plant for understanding plant adaptations to P and Fe deficiency, because of its ability to form cluster roots, bottle-brush-like root structures that play an important role in the uptake of P and Fe from soil. However, little is known about the signaling pathways involved in sensing and responding to P and Fe deficiency. Sucrose, sent in increased concentrations from the shoot to the root, has been identified as a long- distance signal of P and Fe deficiencies. To unravel responses to sucrose as a signal, we performed Oxford Nanopore cDNA sequencing of white lupin roots treated with sucrose for 10 min, 15 min, and 20 min, compared to untreated controls. We identified a set of 17 genes, including two bHLH transcription factors, that were upregulated at all three time points of sucrose treatment. GO (gene ontology) analysis revealed enrichment of auxin- and gibberellin-responses as early as 10 min after sucrose addition, and the emerging of ethanol-responses at 20 min of sucrose treatment, indicating a sequential involvement of these hormones in plant responses to sucrose.

2024-05-27 | GSE268152 | GEO

Lupinus albus breed:Lupinus albus L. | cultivar:Amiga

Project description:Lupinus albus breed:Lupinus albus L. | cultivar:Amiga Genome sequencing and assembly

| PRJNA558877 | ENA

Lupinus albus breed:Lupinus albus L. | cultivar:Amiga

Project description:Lupinus albus breed:Lupinus albus L. | cultivar:Amiga Genome sequencing and assembly

| PRJNA558879 | ENA

Lupinus albus cultivar:AMIGA

Project description:Lupinus albus CENH3-ChIP and ChIP-seq analysis

| PRJNA593700 | ENA

Lupinus albus cultivar:AMIGA

Project description:Lupinus albus cultivar:AMIGA Genome sequencing and assembly

| PRJNA575804 | ENA

RNA-seq of coding RNA from cluster roots (pre-emergent, juvenile and mature) from Lupinus albus grown for 20 days under phosphorus-deficiency

Project description:RNA-seq analysis was performed on different developmental stages of cluster roots (pre-emergent, juvenile and mature) from Lupinus albus grown for 20 days under phosphorus-deficiency

2014-07-01 | E-MTAB-2253 | biostudies-arrayexpress

Lupinus albus

Project description:Lupinus albus overview

| PRJNA182554 | ENA

Lupinus albus isolate:GWH2020 | cultivar:Amiga

Project description:Lupinus albus isolate:GWH2020 | cultivar:Amiga Genome sequencing and assembly

| PRJNA592024 | ENA

Lupinus albus

Project description:Lupinus albus pangenome sequencing and assembly

| PRJNA608889 | ENA