Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Differential gene expression in seedlings of pi4kb1b2-Study of pi4kb1b2 mutant

ABSTRACT: Differential gene expression in seedlings of pi4kb1b2-Study of pi4kb1b2 mutant

PROVIDER: PRJNA744433 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15058751.fastq.gz	Fastqsanger.gz
	SRR15058752.fastq.gz	Fastqsanger.gz
	SRR15058753.fastq.gz	Fastqsanger.gz
	SRR15058754.fastq.gz	Fastqsanger.gz
	SRR15058755.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Differential gene expression in seedlings of pi4kb1b2-Study of pi4kb1b2 mutant

Project description:ngs2020_14_pi4kb1b2-differential gene expression in seedlings of pi4kb1b2-Differential gene expression in roots and leaves of seedlings, pi4kb1b2 mutant vs WT-Comparison of gene expression profile between roots and leaves of A.thaliana Col-0 as WT and pi4kb1b2 mutant, 7 days old (developmental stage 1.02), cultivated on MS/2 media supplemented with 0.8% agar and 1% sucrose, 22°C, 16h/8h light)

2022-05-04 | GSE179635 | GEO

Arabidopsis ila3 mutant seedlings versus wild-type seedlings.

Project description:Transcriptional profiling of wild-type Col seedlings compared to ila3 mutant seedlings

2017-07-30 | GSE93312 | GEO

Gene expression profiling in SWD2-like Arabidopsis mutant seedlings

Project description:Gene expression profiling in SWD2-like Arabidopsis mutant seedlings

| PRJNA511595 | ENA

Characterization of differential gene expression profiles between wild-type Ler and proatcape1 mutant seedlings upon salt stress.

Project description:To gain insight into how AtCAPE1 regulates salt response, we investigated the gene expression profiles of wild-type (Ler) and proatcape1 mutant seedlings in the presence and absence of 125 mM NaCl by microarray analysis.

2015-07-01 | GSE66946 | GEO

Differential gene expression in spt-2 mutant worms.

Project description:Differential gene expression in spt-2 mutant worms.

| PRJNA934522 | ENA

Identification of changes in gene expression in seedlings of the ashh2/sdg8 Arabidopsis mutant

Project description:Mutation of the ASHH2 gene has pleiotropic developmental effects. The aim of the study was to identify changes in gene expression in seedlings of the ashh2-1/sdg8-1 mutant (SALK_065480, insertion in the gene At1g77300, SDG8/EFS/ASHH2) and look for correlation wth changes in methylation marks on histone tails. Wild type Arabidopsis thaliana (ecotype Colombia) seedlings were used as reference. For low-expresssed tissue-specific genes there was a correlation between reduced H3K36me3 levels and reduction in expression. Although some highly expressed genes with low tissue-specificity show reduced H3K36me3 levels in the mutant, expression levels were, however, not affeccted.

2011-03-31 | GSE22990 | GEO

Gene expression profiling in wild-type, fpa mutant and bdrs triple mutant Arabidopsis seedlings

Project description:Gene expression profiling in wild-type, fpa mutant and bdrs triple mutant Arabidopsis seedlings

| PRJNA446047 | ENA

Gene expression profiling in wild-type, fpa mutant and bdrs triple mutant Arabidopsis seedlings

Project description:We analyzed by RNA-seq the transcriptome of 8-day old Arabidopsis thaliana seedlings for wild-type (Col-0), single mutant for FPA (fpa/AT2G43410, line fpa-7) or a triple mutant of all three BDR proteins (bdrs: cross of bdr1/AT5G25520 mutant SALK_142108C, bdr2/AT5G11430 mutant CS852350 and bdr3/AT2G25640 mutant SALK_059905). We identified hundreds of genes differentially expressed between wild-type and bdrs triple mutant and a significant overlap in DE genes with the fpa mutant. We also analyzed the binding of BDR1 and BDR2 as well as RNA polymerase II and histone marks by ChIP-seq in wild-type, bdrs and fpa-deficient seedlings. Our data support a role of BDRs as negative elongation factors. They occupy the gene body and regulate the expression of genes involved in defense response pathways. Strikingly, by modulating 3' pausing of RNA polymerase II and possibly contributing to gene looping, they also protect a number of genes from transcriptional interferences originating from a highly expressed upstream tandem gene. Thus BDRs proteins are negative elongation factors that act as transcriptional "gatekeepers" in the Arabidopsis thaliana genome.

2019-08-08 | GSE112440 | GEO

Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings

Project description:We sequenced mRNA from WT and PhytochromeInteractingFactor (pif) mutant seedlings grown for 2d in darkness.

2014-10-02 | GSE42665 | GEO

Gene expression data of Arabidopsis thaliana yaf9a yaf9b double mutant seedlings

Project description:Gene expression data of Arabidopsis thaliana yaf9a yaf9b double mutant seedlings

| PRJNA518907 | ENA