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Transcriptome of Achnatherum inebrians

ABSTRACT: Transcriptome of Achnatherum inebrians

PROVIDER: PRJNA748183 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR15207140_1.fastq.gz	Fastqsanger.gz
	SRR15207140_2.fastq.gz	Fastqsanger.gz
	SRR15207141_1.fastq.gz	Fastqsanger.gz
	SRR15207141_2.fastq.gz	Fastqsanger.gz
	SRR15207142_1.fastq.gz	Fastqsanger.gz

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Achnatherum inebrians

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Epichloe inebrians

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RNA-seq of N. gansuense-infected (E+) vs. non-infected (E-) A. inebrians

Project description:The molecular regulation mechanisms involved in stress tolerance remain largely unknown. Drunken horsegrass (Achnatherum inebrians), an important perennial bunchgrass in China, forms a naturally occurring symbiosis with an asexual symbiotic fungus Neotyphodium gansuense.To gain insight into the molecular mechanisms involved in the low temperature resistance of E+ drunken horsegrass, Solexa deep-sequencing was used to identify candidate genes showing differential expression.

2016-01-20 | E-MTAB-4199 | biostudies-arrayexpress

Cuticular Wax Modification by Epichloe Endophyte in Achnatherum inebrians under Different Soil Moisture Availability

Project description:The cuticular wax serves as the outermost hydrophobic barrier of plants against nonstomatal water loss and various environmental stresses. An objective of this study was to investigate the contribution of the mutualistic fungal endophyte Epichloë gansuensis to leaf cuticular wax of Achnatherum inebrians under different soil moisture availability. Through a pot experiment and gas chromatography−mass spectrometry (GC−MS) analysis, our results indicated that the hydrocarbons were the dominant components of leaf cuticular wax, and the proportion of alcohols, aldehydes, amines, and ethers varied with the presence or absence of E. gansuensis and different soil moisture availability. Amines and ethers are unique in endophyte-free (EF) A. inebrians plants and endophyte-infected (EI) A. inebrians plants, respectively. By transcriptome analysis, we found a total of 13 differentially expressed genes (DEGs) related to cuticular biosynthesis, including FabG, desB, SSI2, fadD, BiP, KCS, KAR, FAR, and ABCB1. A model is proposed which provides insights for understanding cuticular wax biosynthesis in the association of A. inebrians plants with E. gansuensis. These results may help guide the functional analyses of candidate genes important for improving the protective layer of cuticular wax of endophyte-symbiotic plants.

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Complete chloroplast genomes of Achnatherum inebrians and comparative analyses with related species from Poaceae.

Project description:This article reports the complete chloroplast genome of Achnatherum inebrians, a poisonous herb that is widely distributed in the rangelands of Northern China. The genome is 137 714 bp in total and consists of a large single-copy (81 758 bp) region and small single-copy (12 682 bp) region separated by a pair of inverted repeats (21 637 bp). The genome contains 130 genes, including 84 protein-coding genes, 38 tRNA genes and 8 ribosomal RNA genes, and the guanine + cytosine content is 36.17%. We subsequently performed comparative analysis of complete genomes from A. inebrians and other Poaceae-related species from GenBank. Thirty-eight simple sequence repeats were identified, further demonstrating rapid evolution in Poaceae. Finally, the phylogenetic trees of 37 species of Poaceae and 2 species of Amaranthaceae were constructed by using maximum likelihood and Bayesian inference methods, based on the genes of the complete chloroplast genome. We identified hotspots that can be used as molecular markers and barcodes for phylogenetic analysis, as well as for species identification. Phylogenetic analysis indicated that A. inebrians is a member of the genus Stipa rather than Achnatherum.

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Epichloe gansuensis var. inebrians E818

Project description:Epichloe gansuensis var. inebrians E818 Genome sequencing and assembly

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Interactive Effects of Epichloe Endophyte, Dormancy-Breaking Treatments and Geographic Origin on Seed Germination of Achnatherum inebrians.

Project description:the cool-season grass Achnatherum inebrians (drunken horse grass) is an important species in the northwest grasslands of China. This grass engages in a symbiotic relationship with Epichloë endophytes, which affect host plants by increasing growth, repelling herbivores, and increasing tolerance to stressful environments. in this work, we evaluated the interaction effects of the endophyte on various dormancy-breaking treatments on A. inebrians seeds from six different locations. We used both endophyte-infected plants and noninfected plants and applied four dormancy-breaking methods to test germination. our results showed that the germination rate of endophytic Achnatherum inebrians seeds from the Xiahe site (with highest altitude) was significantly higher than that from other sites when water soaking was applied (p < 0.05). Endophytic seeds had a greater germination rate, and soluble sugar, indole acetic acid (IAA), and gibberellin (GA) contents, under any condition. There was a significant interaction among the method, endophyte status, and origin regarding germination (p < 0.001); particularly, the effects of warm water soaking and endophyte infection on the germination of seeds from the Xiahe site was significant (p < 0.05). the infection of Epichloë endophyte is able to increase the content of soluble sugar, IAA, and GA, and stimulate the seed germination of A. inebrians.

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