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Metagenome assembly

ABSTRACT: Metagenome-Assembled Genomes MAGs

PROVIDER: PRJNA748244 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR16831280.fastq.gz	Fastqsanger.gz
	SRR16831281.fastq.gz	Fastqsanger.gz
	SRR16831282.fastq.gz	Fastqsanger.gz
	SRR16831283.fastq.gz	Fastqsanger.gz
	SRR16831284.fastq.gz	Fastqsanger.gz

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Community-integrated multi-omics facilitates screening and isolation of the organohalide dehalogenation microorganism

Project description:<p>A variety of anthropogenic organohalide contaminants generated from industry are released into the environment, and thus cause serious pollution that endangers human health. In the present study, we investigated the microbial community composition of industrial saponification wastewater using 16S rRNA sequencing, providing genomic insights of potential organohalide dehalogenation bacteria (OHDBs) by whole-metagenome sequencing. We also explored yet-to-culture OHDBs involved in the microbial community. Microbial diversity analysis reveals that Proteobacteria and Patescibacteria phyla dominate microbiome abundance of the wastewater. In addition, a total of six bacterial groups (Rhizobiales, Rhodobacteraceae, Rhodospirillales, Flavobạcteriales, Micrococcales, and Saccharimonadales) were found as biomarkers in the key organohalide removal module. Ninety-four metagenome-assembled genomes (MAGs) were reconstructed from the microbial community, and 105 hydrolytic dehalogenase genes within 42 MAGs were identified, suggesting that the potential for hydrolytic organohalide dehalogenation is present in the microbial community. Subsequently, we characterized the organohalide dehalogenation of an isolated OHDB, Microbacterium sp. J1-1, which shows the dehalogenation activities of chloropropanol, dichloropropanol, and epichlorohydrin. This study provides a community-integrated multi-omics approach to gain functional OHDBs for industrial organohalide dehalogenation.</p>

2022-11-21 | MTBLS3916 | MetaboLights

Project description:Metagenome-assembled genomes (MAGs) from the yak faecal microbiota

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