Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Nymphaea micrantha genome sequencing

PROVIDER: PRJNA750447 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15279790_1.fastq.gz	Fastqsanger.gz
	SRR15279790_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [sRNA-seq]

Project description:M. micrantha has caused huge ecological damage and economic losses worldwide due to its rapid growth and serious invasion. However, the underlying molecular mechanisms of its rapid growth and environmental adaption remain unclear. Here, we performed transcriptome and small RNA sequencing with five tissues of M. micrantha to dissect miRNA-mediated regulation in M. micrantha. WGCNA and GO enrichment analysis of transcriptome identified the gene association patterns and potential key regulatory genes for plant growth in each tissue. The genes highly correlated with leaf and stem tissues were mainly involved in the chlorophyll synthesis, response to auxin, the CAM pathway and other photosynthesis-related processes, which promoted the fast growth of M. micrantha. Importantly, we identified 350 conserved and 192 novel miRNAs, many of which displayed differential expression patterns among tissues. PsRNA target prediction analysis uncovered target genes of both conserved and novel miRNAs, including GRFs and TCPs, which were essential for plant growth and development. Further analysis revealed that miRNAs contributed to the regulation of tissue-specific gene expression in M. micrantha, such as mmi-miR396 and mmi-miR319. Taken together, our study uncovered the miRNA-mRNA regulatory networks and the potential vital roles of miRNAs in modulating the rapid growth of M. micrantha.

2023-08-01 | GSE210299 | GEO

Integrated analysis of transcriptome and small RNAome reveals the regulatory network for rapid growth in Mikania micrantha [RNA-seq]

2023-08-01 | GSE210298 | GEO

Stewartia micrantha isolate:micrantha

Project description:Stewartia micrantha isolate:micrantha Genome sequencing and assembly

| PRJNA482560 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Project description:Nymphaea L. sequencing

| PRJNA548276 | ENA

Stephania micrantha

Project description:Stephania micrantha Genome sequencing and assembly

| PRJNA1007921 | ENA

Camellia micrantha

Project description:Camellia micrantha Genome sequencing and assembly

| PRJNA750259 | ENA

Nymphaea nouchali var. caerulea

Project description:Nymphaea nouchali var. caerulea Genome sequencing

| PRJNA478769 | ENA