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RNA sequencing of DDX23 knockdown by siRNA in ovarian cancer cells

ABSTRACT: RNA sequencing of DDX23 knockdown by siRNA in ovarian cancer cells

PROVIDER: PRJNA750648 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR15293971_1.fastq.gz	Fastqsanger.gz
	SRR15293971_2.fastq.gz	Fastqsanger.gz
	SRR15293972_1.fastq.gz	Fastqsanger.gz
	SRR15293972_2.fastq.gz	Fastqsanger.gz
	SRR15293973_1.fastq.gz	Fastqsanger.gz

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RNA sequencing (RNA-SEQ) of RECQL4 knockdown by siRNA in ovarian cancer cells

Project description:The high frequency of somatic copy number alterations, as opposed to point mutations, is considered a unique feature of high-grade serous ovarian carcinoma (HGSOC). Amplification-dependent overexpression of RECQL4, which participates in DNA replication and repair, mediates the development of various cancers, but its pathobiological and clinical roles are poorly understood. Here, using bioinformatics analysis, RECQL4 amplification was found to occur in 27% of HGSOC samples in the TCGA cohort. RECQL4 was found to be upregulated and associated with a poor prognosis based on the immunohistochemistry staining of HGSOC. Functionally, RECQL4 overexpression increased proliferation and invasion of ovarian cancer cells both in vitro and in vivo. RECQL4 silencing had the opposite effects. In addition, RECQL4 knockdown enhanced the sensitivity of ovarian cancer cells to cisplatin and PARP inhibitor (PARPi). Further mechanistic investigations revealed that MAFB was a downstream target of RECQL4. The oncogenic effect of RECQL4 was attenuated after MAFB knockdown. Moreover, RECQL4 overexpression was negatively regulated by the tumour suppressor miR-10a-5p. Collectively, these findings indicate that genomic amplification and low expression of miR-10a-5p contribute to RECQL4 overexpression in ovarian cancer. This is the first study to reveal the oncogenic functions and clinical significance of RECQL4 in ovarian cancer.

2020-10-13 | GSE153839 | GEO

RNA sequencing of SF3B4 knockdown by siRNA in ovarian cancer cells

Project description:In this study, SF3B4 was found to be upregulated in ovarian cancer patients and its high expression predicted poor prognosis. High expression of SF3B4 was involved in the malignant proliferation and mobility of ovarian cancer. SF3B4 could be a promising biomarker and effective therapeutic target for ovarian cancer.

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RNA sequencing of MEX3A knockdown by siRNA in ovarian cancer cells

Project description:RNA-binding proteins can serve as novel potential targets for cancer therapy. We used bioinformatics analysis to screen and identify the key RBPs in ovarian cancer (OC), from which we found that Mex-3 RNA Binding Family Member A (MEX3A) was intimately associated with the clinical prognosis of OC. High expression of MEX3A was involved in the malignant proliferation and aggressiveness of ovarian cancer.

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RNA sequencing of DDX23 knockdown by siRNA in ovarian cancer cells

Project description:DDX23 belongs to DEAD-box family of RNA helicases and plays crucial roles in spliceosome formation and pre-mRNA splicing. In this study, DDX23 was first identified as a key DEAD-box RNA helicase in ovarian cancer, and its overexpressed was associated with poor clinical outcomes. High expression of DDX23 was involved in the malignant proliferation and aggressiveness of ovarian cancer.

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RNA sequencing of PART1 knockdown by siRNA in ovarian cancer cells

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2024-02-01 | GSE253450 | GEO

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