Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella nanhaiensis strain:NR704-98

ABSTRACT: Shewanella nanhaiensis strain:NR704-98 Genome sequencing and assembly

PROVIDER: PRJNA750816 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Flagellimonas nanhaiensis strain:SM1704

Project description:Flagellimonas nanhaiensis strain:SM1704 Genome sequencing and assembly

| PRJNA484606 | ENA

Tamlana nanhaiensis strain:FHC16

Project description:Tamlana nanhaiensis strain:FHC16 Genome sequencing and assembly

| PRJNA266858 | ENA

Shewanella oneidensis MR-1 etrA deletion mutant strain expression profiling determines fine-tuning regulatory role in anaerobic metabolism

Project description:Comparisson of expression profiling of a etrA deletion mutant strain (experimental sample) with that of the wild type Shewanella oneidensis MR-1 strain to assess global direct/indirect genetic regulation EtrA in Shewanella oneidensis MR-1 shares 73.6% and 50.8% amino acid sequence identity with the oxygen-sensing regulator Fnr in E. coli and Anr in Pseudomonas aeruginosa, respectively; however, its regulatory role of anaerobic metabolism in Shewanella spp. is complex and not well understood. Whole-genome expression profiling using a etrA gene deletion mutant as the experimental sample and the wild type strain as the reference, determine that EtrA fine-tunes the expression of genes involved in various anaerobic metabolic pathways, including nitrate, fumarate and dimethyl sulfoxide reduction. Moreover, genes involved in prophage activation and and genes implicated in aerobic metabolism were also differentially expressed. In contrast to previous studies that attributed a minor regulatory role to EtrA in Shewanella spp., this study demonstrates that EtrA acts as a global transcriptional regulator and cofers physiological advantages to the strain under certain growth conditions.

2011-01-29 | GSE26935 | GEO

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

2013-11-01 | GSE44689 | GEO

Streptomonospora nanhaiensis strain:12A09

Project description:Streptomonospora nanhaiensis strain:12A09 Genome sequencing

| PRJNA905050 | ENA

Fictibacillus nanhaiensis strain:KCTC 13712

Project description:Fictibacillus nanhaiensis strain:KCTC 13712 Genome sequencing and assembly

| PRJNA681390 | ENA

Emcibacter nanhaiensis strain:MCCC 1A06723

Project description:Emcibacter nanhaiensis strain:MCCC 1A06723 Genome sequencing and assembly

| PRJNA548598 | ENA

Leeuwenhoekiella nanhaiensis strain:G18

Project description:Leeuwenhoekiella nanhaiensis genome sequencing

| PRJNA398706 | ENA

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

Project description:To identify the transcriptional targets of the DNA-binding response regulator HnoC (SO_2540), mRNA transcript levels in Shewanella oneidensis were measured using whole genome microarray analysis. Transcript levels were compared between WT Shewanella oneidensis and a hnoC deletion strain. Transcript levels of a WT and hnoC deletion strain were measured after 15 hrs growth, 4 independent replicates were performed for each strain

2013-11-01 | E-GEOD-44689 | biostudies-arrayexpress

Halopseudomonas nanhaiensis strain:SCS 2-3

Project description:Halopseudomonas nanhaiensis strain:SCS 2-3 Genome sequencing and assembly

| PRJNA725069 | ENA