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Landscape of super-enhancer-associated lncRNAs in hepatocellular carcinoma [lncRNA-seq]

ABSTRACT: Landscape of super-enhancer-associated lncRNAs in hepatocellular carcinoma [lncRNA-seq]

PROVIDER: PRJNA753297 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR15402150_1.fastq.gz	Fastqsanger.gz
	SRR15402150_2.fastq.gz	Fastqsanger.gz
	SRR15402151_1.fastq.gz	Fastqsanger.gz
	SRR15402151_2.fastq.gz	Fastqsanger.gz
	SRR15402152_1.fastq.gz	Fastqsanger.gz

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Landscape of super-enhancer-associated lncRNAs in hepatocellular carcinoma

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Landscape of super-enhancer-associated lncRNAs in hepatocellular carcinoma [lncRNA-seq]

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Project description:Prostate cancer (PCa) is one of the most commonly diagnosed cancers in males worldwide. lncRNAs (long non-coding RNAs) play a significant role in the occurrence and development of PCa. eRNAs (enhancer RNA) and SE-lncRNAs (super-enhancer lncRNA) are important elements of lncRNAs, but the role of eRNAs and SE-lncRNAs in PCa remains largely unclear. In this work, we identified 681 eRNAs and 292 SE-lncRNAs that were expressed differentially in PCa using a microarray. We constructed a transcriptional regulation network that eRNA related enhancer and the target genes shared the same TF binding motifs. Further, we investigated whether CTCF played a role in mediating the transcriptional regulation network. eRNAs, especially those that regulate androgen response genes, may be candidates for prognostic biomarkers and therapy targets. Our work provide a new perspective for developing medical treatments and therapies for prostate cancer.

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