Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Basidiobolus ranarum

ABSTRACT: Basidiobolus ranarum overview

PROVIDER: PRJNA759692 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10506345_subreads.fastq.gz	Fastqsanger.gz
	SRR10506346_subreads.fastq.gz	Fastqsanger.gz
	SRR10506347_subreads.fastq.gz	Fastqsanger.gz
	SRR10506348_subreads.fastq.gz	Fastqsanger.gz
	SRR10506349_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Basidiobolus ranarum strain:AG-B5

Project description:Basidiobolus ranarum AG-B5 Transcriptome - BranB5

| PRJNA713267 | ENA

Basidiobolus ranarum strain:AG-B5

Project description:Basidiobolus ranarum AG-B5 Genome sequencing and assembly

| PRJNA759578 | ENA

Basidiobolus ranarum strain:AG-B5

Project description:Basidiobolus ranarum AG-B5 Standard Draft genome sequencing

| PRJNA364306 | ENA

Basidiobolus microsporus

Project description:Basidiobolus microsporus overview

| PRJNA1081542 | ENA

Basidiobolus meristosporus

Project description:Basidiobolus meristosporus overview

| PRJNA196378 | ENA

Basidiobolus heterosporus

Project description:Basidiobolus heterosporus overview

| PRJNA520270 | ENA

Basidiobolus heterosporus strain:ARSEF 8332

Project description:Basidiobolus heterosporus ARSEF 8332 Resequencing

| PRJNA519387 | ENA

Basidiobolus meristosporus CBS 931.73

Project description:Basidiobolus meristosporus CBS 931.73 Genome sequencing and assembly

| PRJNA196075 | ENA

Basidiobolus meristosporus CBS 931.73 isolate:CBS 931.73

Project description:Basidiobolus meristosporus CBS 931.73 transcriptome

| PRJNA459567 | ENA

The gut fungus Basidiobolus ranarum has a large genome and different copy numbers of putatively functionally redundant elongation factor genes.

Project description:Fungal genomes range in size from 2.3 Mb for the microsporidian Encephalitozoon intestinalis up to 8000 Mb for Entomophaga aulicae, with a mean genome size of 37 Mb. Basidiobolus, a common inhabitant of vertebrate guts, is distantly related to all other fungi, and is unique in possessing both EF-1α and EFL genes. Using DNA sequencing and a quantitative PCR approach, we estimated a haploid genome size for Basidiobolus at 350 Mb. However, based on allelic variation, the nuclear genome is at least diploid, leading us to believe that the final genome size is at least 700 Mb. We also found that EFL was in three times the copy number of its putatively functionally overlapping paralog EF-1α. This suggests that gene or genome duplication may be an important feature of B. ranarum evolution, and also suggests that B. ranarum may have mechanisms in place that favor the preservation of functionally overlapping genes.

| S-EPMC3281927 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data