Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: DNA-seq of AOA: agricultural soils Raw sequence reads

PROVIDER: PRJNA762148 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16122978_1.fastq.gz	Fastqsanger.gz
	SRR16122978_2.fastq.gz	Fastqsanger.gz
	SRR16122979_1.fastq.gz	Fastqsanger.gz
	SRR16122979_2.fastq.gz	Fastqsanger.gz
	SRR16122980_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 77

Similar Datasets

Project description:DNA extracted from agricultural soils Raw sequence reads

| PRJNA833079 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

soil metagenome

Project description:Agricultural soils Raw sequence reads

| PRJNA290184 | ENA

soil metagenome

Project description:zonal agricultural soils Raw sequence reads

| PRJNA310411 | ENA

Agricultural soils Microbe

Project description:Agricultural soils Microbe Raw sequence reads

| PRJNA785286 | ENA

454 sequencing of different soils (AOA)

Project description:454 sequencing of different soils (AOA) Raw sequence reads

| PRJNA449251 | ENA

Xuzhou fertilized agricultural soils

Project description:Xuzhou fertilized agricultural soils Raw sequence reads

| PRJNA656082 | ENA

Agricultural soils across China

Project description:Agricultural soils across China Raw sequence reads

| PRJNA1001117 | ENA

Implications of the use of organic fertilizers for Antibiotic Resistant Gene dissemination in agricultural soils and fresh food products. A plot-scale study

Project description:The spread of antibiotic resistance genes (ARG) into agricultural soils, products, and foods severely limits the use of organic fertilizers in agriculture. In this study, experimental land plots were fertilized, sown, and harvested for two consecutive agricultural cycles using either mineral or three types of organic fertilizers: sewage sludge, pig slurry, or composted organic fraction of municipal solid waste. The analysis of the relative abundances of more than 200,000 ASV (Amplicon Sequence Variants) allowed the identification of a small, but significant (<10%) overlap between soil and fertilizer microbiomes, particularly in soils sampled the same day of the harvest (post-harvest soils). Loads of clinically relevant ARG were significantly higher (up to 100 fold) in fertilized soils relative to the initial soil. The highest increases corresponded to post-harvest soils treated with organic fertilizers, and they correlated with the extend of the contribution of fertilizers to the soil microbiome. Edible products (lettuce and radish) showed low, but measurable loads of ARG (sul1 for lettuces and radish, tetM for lettuces). These loads were minimal in mineral fertilized soils, and strongly dependent on the type of fertilizer. We concluded that at least part of the observed increase on ARG loads in soils and foodstuffs were actual contributions from the fertilizer microbiomes. Thus, we propose that adequate waste management and good pharmacological and veterinarian practices may significantly reduce the potential health risk posed by the presence of ARG in agricultural soils and plant products.

2021-07-09 | GSE179685 | GEO

AOA

Project description:AOA Raw sequence reads

| PRJNA656067 | ENA