Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metatranscriptome of phytoplankton in Beibu Gulf

PROVIDER: PRJNA762196 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15845140.fastq.gz	Fastqsanger.gz
	SRR15845141.fastq.gz	Fastqsanger.gz
	SRR15845142.fastq.gz	Fastqsanger.gz
	SRR15845143.fastq.gz	Fastqsanger.gz
	SRR15845144.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Beibu Gulf survey

| PRJNA1109585 | ENA

Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment

Project description:Sequencing the metatranscriptome can provide information about the response of organisms to varying environmental conditions. We present a methodology for obtaining random whole-community mRNA from a complex microbial assemblage using Pyrosequencing. The metatranscriptome had, with minimum contamination by ribosomal RNA, significant coverage of abundant transcripts, and included significantly more potentially novel proteins than in the metagenome. Keywords: metatranscriptome, mesocosm, ocean acidification This experiment is part of a much larger experiment. We have produced 4 454 metatranscriptomic datasets and 6 454 metagenomic datasets. These were derived from 4 samples. The experiment is an ocean acidification mesocosm set up in a Norwegian Fjord in 2006. We suspended 6 bags containing 11,000 L of sea water in a Coastal Fjord and then we bubbled CO2 through three of these bags to simulate ocean acidification conditions in the year 2100. The other three bags were bubbled with air. We then induced a phytoplankton bloom in all six bags and took measurements and performed analyses of phytoplankton, bacterioplankton and physiochemical characteristics over a 22 day period. We took water samples from the peak of the phytoplankton bloom and following the decline of the phytoplankton bloom to analyses using 454 metagenomics and 454 metatranscriptomics. Day 1, High CO2 Bag and Day 1, Present Day Bag, refer to the metatranscriptomes from the peak of the bloom. Day 2, High CO2 Bag and Day 2, Present Day Bag, refer to the metatranscriptomes following the decline of the bloom. Obviously High CO2 refers to the ocean acidification mesocosm and Present Day refers to the control mesocosm. Raw data for both the metagenomic and metatranscriptomic components are available at NCBI's Short Read Archive at ftp://ftp.ncbi.nlm.nih.gov/sra/Studies/SRP000/SRP000101

2008-02-08 | E-GEOD-10119 | biostudies-arrayexpress

Project description:Metagenomic in Beibu Gulf

| PRJNA854303 | ENA

Project description:Morphological and Molecular Diversity of Phytoplankton in Beibu Gulf, Northern South China Sea

| PRJNA1155855 | ENA

Project description:Sediment community structure in Beibu Gulf

| PRJNA1038687 | ENA

BBW_1 BBW_4 BBW_5 BBW_9 BBW_11 BBW_12 BBW_13 BBW_17 BBW_18 BBW_20 BBW_22 BBW_24 BBW_29 YLJ_4 YLJ_5 YLJ_7 YLJ_8 YLJ_9 YLJ_11 YLJ_13 YLJ_17 YLJ_19 YLJ_20 YLJ_21 YLJ_22 YLJ_26 YLJ_27

Project description:2020 Beibu Gulf and Yalu River sediment Metagenome samples

| PRJNA855291 | ENA

Project description:Intestinal microorganisms of five shellfish species in the Beibu Gulf, China

| PRJNA734603 | ENA