Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: TLI IWG Cycle 10 Breeding Program

PROVIDER: PRJNA764190 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15950148.fastq.gz	Fastqsanger.gz
	SRR15950149.fastq.gz	Fastqsanger.gz
	SRR15950150.fastq.gz	Fastqsanger.gz
	SRR15950151.fastq.gz	Fastqsanger.gz
	SRR15950152.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 23

Similar Datasets

Thinopyrum intermedium strain:Wheatgrass | breed:TLI Breeding Program

Project description:TLI IWG Cycle 9 Breeding Program

| PRJNA627489 | ENA

Project description:TLI IWG Cycle 11 Breeding Program

| PRJNA767954 | ENA

Project description:TLI IWG Cycle 12 Breeding Program

| PRJNA901025 | ENA

Project description:TLI IWG Cycle 13 Breeding Program

| PRJNA948824 | ENA

Project description:TLI IWG Cycle 14 Breeding Program

| PRJNA1044398 | ENA

Project description:TLI IWG Cycle 11 & 12 FFAR Phenomics

| PRJNA1044453 | ENA

Project description:TLI-IWG, The Land Institute intermediate wheatgrass

| PRJNA609325 | ENA

Thinopyrum intermedium

Project description:TLI Cycle 8

| PRJNA609095 | ENA

Comparison of transcriptome profiles of human embryo cultured in either closed or standard incubator

Project description:Measuring transcriptomic profiles of human embryos cultured in time-lapse imaging (TLI) incubator and standard incubator (SI) is crucial for studying whether the closed culture system has a positive impact on embryos. Here we used RNA-sequencing (RNA-Seq) to characterize and compare the gene expression profiles of TLI and SI cultured 8-cell embryos with the same quality grade. A total of 580,952,620 fragments were sequenced for zygote, SI and TLI groups. The global transcriptomic profiles of embryos from TLI group were similar to SI group, with a high distinct to zygotes. However, wo also detected 539 genes showing differential expression between the TLI and SI group with false discovery rate (FDR) < 0.05. Using GO enrichment analysis, we found that the high expressed genes in SI tend to execute functions, including transcription, RNA splicing and DNA repair, and the high expressed genes in TLI were enriched in the cell differentiation and methyltransferase activity pathway. This study provides the first comparison between SI and TLI via transcriptome analysis, and will serve as a basis for assessing the safety of TLI application in assisted reproductive technology.

2020-07-29 | GSE114771 | GEO

Transcriptome-wide expression analysis of pooled brain samples of patients with Alzheimer's disease compared to controls

Project description:Brain tissue of 3 patients with Alzheimer's disease (AD) and 3 healthy controls dying without any history of neurological or psychiatric illness was used. The diagnosis of AD was made on the basis of both clinical and neuropathological evidence according to the criteria of the International Working Group (IWG) for New Research Criteria for the diagnosis of AD in the revision of 2014 (IWG-2),16 the NIA-AA diagnostic criteria in the revision of 201117 and the NIA-AA guidelines for the neuropathological assessment of AD. Only cases with typical AD according to IWG-2 criteria were included. Transcriptome-wide expression of AD and healthy control samples was assessed with Affymetrix Human Whole Genome Tiling Array 1.0 Set.

2022-01-19 | GSE138214 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data