Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Time course ATAC-Seq on Parhyale hawaiensis embryos

PROVIDER: PRJNA765106 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16003000_1.fastq.gz	Fastqsanger.gz
	SRR16003000_2.fastq.gz	Fastqsanger.gz
	SRR16003001_1.fastq.gz	Fastqsanger.gz
	SRR16003001_2.fastq.gz	Fastqsanger.gz
	SRR16003002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

Project description:Time course EM-seq on Parhyale hawaiensis embryos

| PRJNA1033446 | ENA

Project description:Time course RNA-Seq on Parhyale hawaiensis embryos

| PRJNA765726 | ENA

Identification and classification of cis-regulatory elements in the amphipod crustacean Parhyale hawaiensis

Project description:Here, we present new functional genomic resources for the amphipod crustacean Parhyale hawaiensis, facilitating the exploration of gene regulatory evolution using this emerging research organism. We use Omni-ATAC-Seq, an improved form of the Assay for Transposase-Accessible Chromatin coupled with next-generation sequencing (ATAC-Seq), to identify accessible chromatin genome-wide across a broad time course of Parhyale embryonic development. This time course encompasses many major morphological events, including segmentation, body regionalization, gut morphogenesis, and limb development. In addition, we use short- and long-read RNA-Seq to generate an improved Parhyale genome annotation, enabling deeper classification of identified regulatory elements. We leverage a variety of bioinformatic tools to discover differential accessibility, predict nucleosome positioning, infer transcription factor binding, cluster peaks based on accessibility dynamics, classify biological functions, and correlate gene expression with accessibility.

2022-05-25 | GSE197886 | GEO

Time-course embryonic transcriptomes and improved genome annotation for the amphipod crustacean Parhyale Hawaiensis

Project description:We performed RNA-Seq across multiple time points of development (stages 13, 19, 21, 23) in Parhyale hawaiensis and generated an improved genome annotation.

2022-05-25 | GSE202252 | GEO

Proteogenomics of Parhyale hawaiensis ovaries

Project description:Proteogenomics of Parhyale hawaiensis ovaries to define the core-proteome of female reproductive tissues from crustacean amphipods

2015-09-21 | PXD002310 | Pride

Parhyale hawaiensis

Project description:Parhyale hawaiensis overview

| PRJNA181297 | ENA

Parhyale hawaiensis

Project description:Parhyale hawaiensis head transcriptome

| PRJNA399131 | ENA

Parhyale hawaiensis

Project description:Bisulfite sequencing of Parhyale hawaiensis

| PRJNA324127 | ENA

Single-cell chromatin accessibility profiling of mesoderm development in wild-type and mutant embryos

Project description:Dissection of the functional input of transcription factors in embryos at a molecular and cellular level by sci-ATAC-seq profiling wild-type and TF mutant embryos on a time course of mesoderm/muscle development.

2022-01-18 | E-MTAB-10489 | biostudies-arrayexpress

Project description:Small RNA Sequencing of Parhyale hawaiensis Embryos at Early and Late Stages of Development.

| PRJEB2845 | ENA