Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rachycentron canadum

ABSTRACT: E. G. Silas Centre of Excellence and Innovations (EGS - CoEI) in Marine Fish Microbiome and Nutrigenomics

PROVIDER: PRJNA765138 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16005287_1.fastq.gz	Fastqsanger.gz
	SRR16005287_2.fastq.gz	Fastqsanger.gz
	SRR16005288_1.fastq.gz	Fastqsanger.gz
	SRR16005288_2.fastq.gz	Fastqsanger.gz
	SRR16005289_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 118

Similar Datasets

Project description:Dr. E. G. Silas Centre of Excellence and Innovations in Marine Fish Microbiome and Nutrigenomics (Dr. EGS-CoEI)

| PRJNA841765 | ENA

Trachinotus blochii

Project description:Dr. E. G. Silas Centre of Excellence and Innovations in Marine Fish Microbiome and Nutrigenomics (Sub- Project 2, Nutrigenomics) Trachinotus blochii Transcriptome

| PRJNA1050836 | ENA

Rachycentron canadum

Project description:Rachycentron canadum Genome sequencing and assembly

| PRJNA634421 | ENA

Rachycentron canadum

Project description:Rachycentron canadum Transcriptome or Gene expression

| PRJNA892299 | ENA

Rachycentron canadum

Project description:Transcriptome profiling of Cobia (Rachycentron canadum) in response to Photobacteriumdamselae subsp. piscicida

| PRJNA377793 | ENA

Rachycentron canadum

Project description:Rachycentron canadum overview

| PRJNA378312 | ENA

Rachycentron canadum

Project description:Rachycentron canadum Transcriptome or Gene expression

| PRJNA550021 | ENA

Rachycentron canadum

Project description:De novo transcriptome assembly and functional annotation of cobia (Rachycentron canadum) liver

| PRJNA675281 | ENA

Rachycentron canadum

Project description:Rachycentron canadum Genome sequencing

| PRJNA864890 | ENA

Comparative gonad transcriptome analysis in cobia (<i>Rachycentron canadum</i>).

Project description:Background: Cobia (Rachycentron canadum) is a species of fish with high commercial potential particularly due to fast growth rates. The evidence of sexual size dimorphism favoring females indicate potential benefits in having a monosex culture. However, the involvement of genetic factors responsible for sexual development and gonadal maintenance that produces phenotypic sex in cobia is largely unknown. Methods: In the present study, we performed transcriptome sequencing of cobia to identify sex-biased significantly differentially expressed genes (DEGs) in testes and ovaries. The reliability of the gonad transcriptome data was validated by qPCR analysis of eight selected significantly differential expressed sex-related candidate genes. Results: This comparative gonad transcriptomic analysis revealed that 7,120 and 4,628 DEGs are up-regulated in testes or ovaries, respectively. Further functional annotation analyses identified 76 important candidate genes involved in sex determination cascades or sex differentiation, including 42 known testis-biased DEGs (dmrt1, amh and sox9 etc.), and 34 known ovary-biased DEGs (foxl2, sox3 and cyp19a etc.). Moreover, eleven significantly enriched pathways functionally related to sex determination and sex differentiation were identified, including Wnt signaling pathway, oocyte meiosis, the TGF-beta signaling pathway and MAPK signaling pathway. Conclusion: This work represents the first comparative gonad transcriptome study in cobia. The putative sex-associated DEGs and pathways provide an important molecular basis for further investigation of cobia's sex determination, gonadal development as well as potential control breeding of monosex female populations for a possible aquaculture setting.

| S-EPMC10117682 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data