Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Amycolatopsis coloradensis strain:BCA-696

ABSTRACT: Amycolatopsis sp. BCA-696 Genome sequencing and assembly

PROVIDER: PRJNA765508 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR25722948_1.fastq.gz	Fastqsanger.gz
	SRR25722948_2.fastq.gz	Fastqsanger.gz
	SRR25722949_1.fastq.gz	Fastqsanger.gz
	SRR25722949_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth-promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA-696).

Project description:The draft genome sequence of an agriculturally important actinobacterial species Amycolatopsis sp. BCA-696 was developed and characterized in this study. Amycolatopsis BCA-696 is known for its biocontrol properties against charcoal rot and also for plant growth-promotion (PGP) in several crop species. The next-generation sequencing (NGS)-based draft genome of Amycolatopsis sp. BCA-696 comprised of ~ 9.05 Mb linear chromosome with 68.75% GC content. In total, 8716 protein-coding sequences and 61 RNA-coding sequences were predicted in the genome. This newly developed genome sequence has been also characterized for biosynthetic gene clusters (BGCs) and biosynthetic pathways. Furthermore, we have also reported that the Amycolatopsis sp. BCA-696 produces the glycopeptide antibiotic vancomycin that inhibits the growth of pathogenic gram-positive bacteria. A comparative analysis of the BCA-696 genome with publicly available closely related genomes of 14 strains of Amycolatopsis has also been conducted. The comparative analysis has identified a total of 4733 core and 466 unique orthologous genes present in the BCA-696 genome The unique genes present in BCA-696 was enriched with antibiotic biosynthesis and resistance functions. Genome assembly of the BCA-696 has also provided genes involved in key pathways related to PGP and biocontrol traits such as siderophores, chitinase, and cellulase production.

| S-EPMC11237095 | biostudies-literature

Cronobacter sakazakii strain:696

Project description:Cronobacter sakazakii strain:696 Genome sequencing and assembly

| PRJNA251872 | ENA

Amycolatopsis sp. QT-25 breed:Amycolatopsis sp. | cultivar:Amycolatopsis sp.

Project description:Amycolatopsis sp. QT-25 breed:Amycolatopsis sp. | cultivar:Amycolatopsis sp. Genome sequencing and assembly

| PRJNA943068 | ENA

Corynebacterium glutamicum strain:BCA

Project description:Corynebacterium glutamicum strain:BCA Genome sequencing

| PRJNA646946 | ENA

Proteomic analysis reveals metabolic versatility of Amycolatopsis sp. BX17: a strain native from milpa agroecosystem soil

Project description:Amycolatopsis sp. BX17 is an actinobacterium isolated from milpa soils that antagonizes the phytopathogenic fungus Fusarium graminearum. Metabolites secreted by the actinobacterium cultured in medium without glucose inhibited 100% the mycelial growth of F. graminearum RH1, while in medium supplemented with 20 g/L of glucose inhibition was 65%. With the aim of studying how the metabolism of strain BX17 is modulated by glucose, as the main carbon source, media with 0 and 20 g/L glucose were selected to analyze the intracellular proteins by quantitative label-free proteomic analysis.

2022-02-14 | PXD028644 | Pride

Leptolyngbya boryana CPCC 696

Project description:Leptolyngbya boryana CPCC 696 Genome sequencing and assembly

| PRJNA607751 | ENA

Amycolatopsis

Project description:Amycolatopsis sp. full genome sequencing

| PRJNA978978 | ENA

Amycolatopsis sp. M39

Project description:Amycolatopsis sp. Genome sequencing and assembly

| PRJNA317178 | ENA

Lentisphaera profundi strain:SAORIC-696

Project description:Lentisphaera profundi strain:SAORIC-696 Genome sequencing