Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Analysis of core microbiome of healthy and bacterial wilt infected flue-cured tobacco plants through high throughput sequecncing

PROVIDER: PRJNA767503 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16122705_1.fastq.gz	Fastqsanger.gz
	SRR16122705_2.fastq.gz	Fastqsanger.gz
	SRR16122706_1.fastq.gz	Fastqsanger.gz
	SRR16122706_2.fastq.gz	Fastqsanger.gz
	SRR16122707_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Project description:Flue cured tobacco metagenome

| PRJNA764574 | ENA

Project description:flue cured tobacco bacterial metagenome

| PRJNA762207 | ENA

Project description:Flue-cured tobacco mulching experiment

| PRJNA791202 | ENA

Project description:Bacillus amyloliquefaciens WS-10 induces systemic resistance in flue-cured tobacco plants against bacterial wilt disease

| PRJNA1018200 | ENA

Project description:raw sequence of rhizosphere flue-cured tobacco

| PRJNA732105 | ENA

Metabolomic and Proteomic and Revealed Differences in the Distribution and Synthesis Mechanism of Aroma Precursors in Tobacco Leaf, Stem, and Root at Seedling Stage

Project description:Tobacco, as an important cash crop and model plant, has been studied and explored in various aspects. In China, Yunyan 87 was recognized as a flue-cured tobacco variety and had been widely concerned due to its excellent product quality characteristics. The quality of tobacco products depends on the compound collection of tobacco leaves, including pigments, carbohydrates, amino acids, polyphenols and alkaloids. Present study investigated tobacco seedlings, with the assistant of the untargeted metabonomic technology and the label-free proteomic technology to analyze metabolites and proteins differences in leaf, stem, and root groups respectively. From 298 metabolites and 4993 proteins obtained, there were significant differences in both primary and secondary metabolism involved aroma precursors biosynthesis in seedling tobacco leaves, stems, and roots, such as carbohydrate metabolism, energy metabolism, and amino acid biosynthesis, and secondary metabolism phenylpropanoids, flavonoids and alkaloid biosynthesis in this study. Especially alkaloids metabolites identification results showed nornicotine, anatabine, anatalline, and myosmine, were significantly higher in tobacco roots than in leaves, and stems at seedling stage.

2022-07-12 | PXD032082 | Pride

Carbon-Nitrogen metabolic balance during curing of Flue-cured tobacco

Project description:Carbon-Nitrogen metabolic balance during curing of Flue-cured tobacco

| PRJEB75459 | ENA

Project description:Reducing the nitrate content of burley tobacco by grafting with flue-cured tobacco

| PRJNA720751 | ENA

Differential expression of miRNAs in response to topping in tobacco roots

Project description:Topping is an important cultivating measure for flue-cured tobacco, and many genes had been found to be differentially expressed in response to topping. But it is still unclear how these genes are regulated. MiRNAs play a critical role in post-transcriptional gene regulation, so we sequenced two sRNA libraries from tobacco roots before and after topping, with a view to exploring transcriptional differences in miRNAs.Two sRNA libraries were generated from tobacco roots before and after topping. Solexa high-throughput sequencing of tobacco small RNAs revealed a total of 12,104,207 and 11,292,018 reads representing 3,633,398 and 3,084,102 distinct sequences before and after topping. The expressions of 136 conserved miRNAs (belonging to 32 families) and 126 new miRNAs (belonging to 77 families) were determined. There were three major conserved miRNAs families (nta-miR156, nta-miR172 and nta-miR171) and two major new miRNAs families (nta-miRn2 and nta-miRn26). All of these identified miRNAs can be folded into characteristic miRNA stem-loop secondary hairpin structures, and qRT-PCR was adopted to validate and measure the expression of miRNAs. Putative targets were identified for 133 out of 136 conserved miRNAs and 126 new miRNAs. Of these miRNAs whose targets had been identified, the miRNAs which change markedly (>2 folds) belong to 53 families and their targets have different biological functions including development, response to stress, response to hormone, N metabolism, C metabolism, signal transduction, nucleic acid metabolism and other metabolism. Some interesting targets for miRNAs had been determined. 2 samples examined:roots before and after topping

2014-11-01 | E-GEOD-33370 | biostudies-arrayexpress

Proteomics analysis of nitrogen stress on the influence of carbon and nitrogen metabolism of flue-cured tobacco

Project description:Nitrogen stress is the main abiotic stress factor affecting the carbon and nitrogen balance of flue-cured tobacco. Tandem mass tag (TMT) proteomics was used to compare the differently expressed proteins (DEPs) of flue-cured tobacco under high- (HN) and low- (LN) nitrogen stress, and Gene Ontology (GO) function annotation, Kyoto Encyclopedia for Genes and Genomes (KEGG) analysis, and protein-protein interaction (PPI) analysis were conducted. The results showed that the difference between LN and HN stress was mainly reflected in the formation pathways of carbon and nitrogen metabolism.

2024-08-22 | PXD055100 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data