Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide H3K27me3 and H3K4me3 analyses in Arabidopsis

ABSTRACT: Genome-wide H3K27me3 and H3K4me3 analyses in Arabidopsis

PROVIDER: PRJNA767679 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16134562_1.fastq.gz	Fastqsanger.gz
	SRR16134562_2.fastq.gz	Fastqsanger.gz
	SRR16134563_1.fastq.gz	Fastqsanger.gz
	SRR16134563_2.fastq.gz	Fastqsanger.gz
	SRR16134564_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Genome-wide H3K4me3 analysis in Arabidopsis

Project description:To explore the bivalent histone modifications in the Arabidopsis genome, we examined genome-wide histone 3 lysine-27 trimethylation (H3K27me3) and histone 3 lysine-4 trimethylation (H3K4me3) in 5-day-old seedlings (Col-0) by ChIP-seq. We found that more than 1300 genes loci contain both H3K27me3 and H3K4me3.

2023-02-28 | GSE185121 | GEO

Genome-wide H3K27me3 analysis in Arabidopsis

2023-02-28 | GSE185120 | GEO

ChIP-seq analyses of H3K27me3 and H3K4me3 in JMJD3c-hESCs

Project description:We generated the human ES lines, in which the genome-wide reduction of H3K27me3 can be induced by the ectopic expression of catalytic domain of histone demethylase JMJD3 with doxycycline treatment (JMJD3c-hESCs). Genome-wide changes in H3K27me3 and H3K4me3 after JMJD3c overexpression were examined by ChIP-seq analyses.

2016-10-18 | GSE80086 | GEO

Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting JMJ14

Project description:Arabidopsis telomeric repeat binding factors (TRBs) can bind telomeric DNA sequences to protect telomeres from degradation. TRBs can also recruit Polycomb Repressive Complex 2 (PRC2) to deposit tri-methylation of H3 lysine 27 (H3K27me3) over certain target loci. Here, we demonstrate that TRBs also associate and colocalize with JUMONJI14 (JMJ14) and trigger H3K4me3 demethylation at some loci. The trb1/2/3 triple mutant and the jmj14-1 mutant show an increased level of H3K4me3 over TRB and JMJ14 binding sites, resulting in up-regulation of their target genes. Furthermore, tethering TRBs to the promoter region of genes with an artificial zinc finger (TRB-ZF) successfully triggers target gene silencing, as well as H3K27me3 deposition, and H3K4me3 removal. Interestingly, JMJ14 is predominantly recruited to ZF off-target sites with low levels of H3K4me3, which is accompanied with TRB-ZFs triggered H3K4me3 removal at these loci. These results suggest that TRB proteins coordinate PRC2 and JMJ14 activities to repress target genes via H3K27me3 deposition and H3K4me3 removal.

2023-02-22 | MSV000091349 | MassIVE

Genome-wide H3K4me3 analysis in Arabidopsis

Project description:Genome-wide H3K4me3 analysis in Arabidopsis

| PRJNA767683 | ENA

Genome-wide H3K27me3 analysis in Arabidopsis

Project description:Genome-wide H3K27me3 analysis in Arabidopsis

| PRJNA767682 | ENA

Genome-wide H3K4me3 and H3K27me3 in HL-60 cells.

Project description:To characterize genome-wide H3K4me3 and H3K27me3 chromatin-state of HL-60 cells.

2018-06-13 | GSE100485 | GEO

Genome-wide profiling for h3k4me3, h3k27me3, and h3k9me3 in Uhrf1hepKO mouse livers

Project description:This study was carried out to investigate potential changes in the genome-wide distribution of h3k4me3, h3k27me3, and h3k9me3 in Uhrf1hepKO mouse livers compared to wild-type.

2019-06-06 | GSE125006 | GEO

Genome-wide profiling of BRAHMA (BRM), BZR1, H3K4me3, H3K27me3, and H4K5ac with indicated growth conditions

Project description:To investigate the effect of BR deficiency on BRM occupancy in the genome. Effect of BR on chromatin accessibility during growth and development in Arabidopsis Examination the occupancy of BRM, BZR1, H3K4me3, H3K27me3, and H4K5ac with indicated growth conditions

2024-01-19 | GSE233416 | GEO

Genome-wide maps of H3K4me3 and H3K27me3 in SATB1-depleted breast cancer cells

Project description:We used chromatin immunoprecipitation-coupled to deep sequencing (ChIP-seq) to profile genome-wide locations of H3K4 trimethylation (H3K4me3) and H3K27 trimethylation (H3K27me3) epigenetic marks in SATB1-depleted MDA-MB-231 aggressive breast cells.

2017-09-22 | GSE87169 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data