Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Raw sequence reads of radial nerve cords in starfish Aphelasterias japonica, Certonardoa semiregularis and Luidia quinaria

PROVIDER: PRJNA767900 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16157127_1.fastq.gz	Fastqsanger.gz
	SRR16157127_2.fastq.gz	Fastqsanger.gz
	SRR16157128_1.fastq.gz	Fastqsanger.gz
	SRR16157128_2.fastq.gz	Fastqsanger.gz
	SRR16157129_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Raw sequence reads of radial nerve cords in starfish Astropecten scoparius

| PRJNA666224 | ENA

Identification of neuropeptides in the Crown-of-Thorns Starfish, Acanthaster planci

Project description:The Crown-of-thorns starfish (COTS) Acanthaster planci feeds on hard corals and its outbreaks are a major cause of destruction of coral communities on the Australian Great Barrier Reef. Whilst population booms and the social behaviour of COTS have been well studied, little is known about the neural mechanisms underlying COTS metabolism and behaviour. One of the major classes of chemical messengers that regulate metabolic and behavioural processes in animals are neuropeptides. Here, we have analysed COTS genome and transcriptome sequence data to identify neuropeptide precursor proteins in this species. Mass spectrometry was employed to identify neuropeptides extracted from radial nerve cords. Forty-nine neuropeptide precursors were identified, including homologs of neuropeptide signaling systems that are evolutionarily conserved throughout the Bilateria.

2018-03-01 | PXD005837 | Pride

Neuropeptidomics of Holothuria scabra

Project description:Neuropeptidomics of the sea cucumber, Holothuria scabra. Peptides from the radial nerve cords of the H. scabra were extracted using a combination of ultrafiltration and acidified methanol-based precipitation.

2024-10-25 | MSV000096212 | MassIVE

Neuropeptidomics of Stichopus cf. horrens

Project description:Neuropeptidomics of the sea cucumber, Stichopus cf. horrens. Peptides from the radial nerve cords of the S. cf. horrens were extracted using a combination of ultrafiltration and acidified methanol-based precipitation.

2024-10-24 | MSV000096207 | MassIVE

Asterias rubens

Project description:Asterias rubens radial nerve raw sequence reads

| PRJNA307640 | ENA

eaLuiSars

Project description:Luidia sarsii ((a starfish))

| PRJEB60212 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

De novo Assembly and Characterization of Swertia japonica Transcriptome for the Identification of Candidate Genes Involved in the Biosynthesis of Therapeutic Metabolites

Project description:Here, we performed deep transcriptome sequencing for the aerial-tissues and the roots of S. japonica, generating over 2 billion raw reads with an average length of 101 nt by using an Illumina paired-end sequencing by HiSeq2000 platform. Using a combined approach of three popular assemblers, de novo transcriptome assembly for S. japonica was obtained, yielding in 81,729 unigenes with an average length as 884bps and N50-value as 1,452bps, with 46,963 unigenes being annotated based on the sequence similarity against NCBI-nr protein database.

2016-07-01 | GSE80057 | GEO

De novo Assembly and Characterization of Swertia japonica Transcriptome for the Identification of Candidate Genes Involved in the Biosynthesis of Therapeutic Metabolites

2016-07-01 | E-GEOD-80057 | biostudies-arrayexpress

eaLuiSars1

Project description:Luidia sarsii ((a starfish)) genome assembly, eaLuiSars1

| PRJEB61567 | ENA