Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Studying relation between microbiome present in Egyptian shrimp ponds and shrimp yield using nanopore metagenome sequencing

PROVIDER: PRJNA768330 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16188860_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Project description:environmental microbiotas in shrimp ponds

| PRJNA474444 | ENA

Project description:Effects of shrimp on eutrophic ponds

| PRJNA1208684 | ENA

Project description:Diagnosis of Dieback disease in Egyptian mango using nanopore-generated metagenomic data

| PRJNA767267 | ENA

The immune defense of shrimp gills through Marsupenaeus japonicus gill C-type lectin (MjGCTL)

Project description:To present, the only known inv*olvement of the gills in the immune response of shrimp is solely assisting the hemocytes in filtering out the harmful factors. This global expression of novel genes revealed several immune-related genes specifically expressed in high amounts only in gills. This data provide new insights on the immune defense of shrimp.

2019-08-08 | GSE105787 | GEO

Project description:Temporal Zhuhai shrimp ponds 16S rRNA sequences

| PRJNA689351 | ENA

Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing

Project description:5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) are modified versions of cytosine in DNA with roles in regulating gene expression. Using whole genomic DNA from mouse cerebellum, we have benchmarked 5mC and 5hmC detection by Oxford Nanopore Technologies sequencing against other standard techniques. In addition, we assessed the ability of duplex base-calling to study strand asymmetric modification. Nanopore detection of 5mC and 5hmC is accurate relative to compared techniques and opens new means of studying these modifications. Strand asymmetric modification is widespread across the genome but reduced at imprinting control regions and CTCF binding sites in mouse cerebellum. This study demonstrates the unique ability of nanopore sequencing to improve the resolution and detail of cytosine modification mapping.

2024-10-23 | GSE279860 | GEO

Project description:Studying Intestinal Microbiomes by Nanopore Sequencing

| PRJNA911758 | ENA

Project description:Microbiome of size-fractionated bioflocs from shrimp ponds

| PRJNA432835 | ENA

Project description:intestine and sediment samples of shrimp culture ponds

| PRJNA797730 | ENA

Project description:intestine and sediment samples of shrimp culture ponds

| PRJNA796471 | ENA