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Topo1cc siganls are presented at the KCl induced acutely activated enhancers [CUT&RUN]

ABSTRACT: Topo1cc siganls are presented at the KCl induced acutely activated enhancers [CUT&RUN]

PROVIDER: PRJNA770273 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR16290039_1.fastq.gz	Fastqsanger.gz
	SRR16290039_2.fastq.gz	Fastqsanger.gz
	SRR16290040_1.fastq.gz	Fastqsanger.gz
	SRR16290040_2.fastq.gz	Fastqsanger.gz
	SRR16290041_1.fastq.gz	Fastqsanger.gz

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Topo1cc siganls are presented at the KCl induced acutely activated enhancers [CUT&RUN]

Project description:Topo1cc siganls are serving as the marker for the KCl induced acutely enhancer activation in cortical neurons.

2022-08-04 | GSE185649 | GEO

Ku70/HP1g are presented at the KCl induced acutely activated enhancers [ChIP-seq]

Project description:Ku70/HP1g are presented at the KCl induced acutely activated enhancers [ChIP-seq]

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Ku70/HP1g are presented at the KCl induced acutely activated enhancers [ChIP-seq]

Project description:Ku70/HP1g are serving as the marker for the KCl induced acutely enhancer activation in cortical neurons.

2022-08-04 | GSE185648 | GEO

Phosphoproteome of five-minute KCl-depolarised mouse cultured hippocampal neurons

Project description:Cultured hippocampal neurons from mice were treated with high concentration KCl for five minutes to depolarise the plasma membrane and model sustained brain activity. A high KCl condition was compared to low KCl using phosphoproteomics. Phosphopeptides were enriched from trypsin digested bio-replicates of the high and low KCl conditions and analysed by mass spectrometry. Approximately 20,000 phosphopeptides were identified enabling a comparison of the relative level of phosphorylation in response to depolarisation.

2023-10-15 | PXD020232 | Pride

Cis-regulation between Irf8 enhancers during cDC1 development (CUT&RUN)

Project description:Cis-regulation between Irf8 enhancers during cDC1 development (CUT&RUN)

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KCl Stress in Desulfovibrio vulgaris Hildenborough (Series 1)

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Comparison of gene regulation by Gcn5 under KCl stress in S. cerevisiae and S. pombe

Project description:This is parallel comparison of gene regulation by Gcn5 in evolutionarily divergent yeasts S. pombe and S. cerevisiae. Our study showed Gcn5 is required for a similar spectrum of stress responses in both organisms, including the response to KCl. This DNA microarray studies is to find conserved or diverged gene regulation pattern under KCl stress condition in the two yeasts. There are 6 subsets in total, 3 subsets in each evolutionarily divergent yeasts including the following: 1 gcn5 mutant compared to wt under rich medium without treatment, 2 gcn5 mutant compared to wild type both under KCl treatment, 3 wild type strains under KCl treatment compared to wild type without treatment. Keywords: stress response, Gcn5, Comparative genomics, Transcriptional co-activator

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Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity [Cut&Run]

Project description:Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity [Cut&Run]

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KCl Stress in Desulfovibrio vulgaris Hildenborough (Series 1)

Project description:Increased salinity constitutes an important and frequent fluctuation faced by D. vulgaris in its natural habitat. Using data from microarray experiments, we investigated the effects of excess KCl on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with 250mM KCl to untreated cells at times of 0, 30, 60, 120, and 240 min. See also Series GSE4447: http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE4447

2010-06-11 | E-GEOD-4515 | biostudies-arrayexpress

Identification of calcineurin-dependent, Crz1-independent gene expression changes in response to chronic KCl stress

Project description:Gene expression was quantified in S. cerevisae cells after 48 hours of treatment with KCl. crz1 and crz1 cnb1 mutant strains were compared to allow the identification of calcineurin-dependent gene expression changes that are independent of the downstream transcription factor Crz1. We find that calcineurin has very little effect on gene expression in response to KCl.

2024-03-19 | GSE254554 | GEO

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