Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nostoc punctiforme PCC 73102

ABSTRACT: Nostoc punctiforme Raw sequence reads (RNA) from a 9 day time series

PROVIDER: PRJNA771494 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16479517_1.fastq.gz	Fastqsanger.gz
	SRR16479517_2.fastq.gz	Fastqsanger.gz
	SRR16479518_1.fastq.gz	Fastqsanger.gz
	SRR16479518_2.fastq.gz	Fastqsanger.gz
	SRR16479519_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

Project description:Change in gene expression for a wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strain (UCD 543) of Nostoc punctiforme ATCC 29133 over the time course of hormogonium development This study is further descirbed in Risser, D.D. and Meeks, J.C. 2013. Comparative transcriptomics with a motility deficient mutant leads to identification of a novel polysaccharide secretion system in Nostoc punctiforme. Molecular Microbiology

2013-01-01 | GSE42859 | GEO

Nostoc punctiforme PCC 73102

Project description:Nostoc punctiforme + PKS1 compounds Raw sequence reads

| PRJNA718147 | ENA

Nostoc punctiforme PCC 73102

Project description:Nostoc punctiforme PCC 73102 Raw sequence reads

| PRJNA666330 | ENA

Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

2013-01-01 | E-GEOD-42859 | biostudies-arrayexpress

Nostoc punctiforme PCC 73102

Project description:Nostoc punctiforme PCC 73102 Genome sequencing and assembly

| PRJNA317596 | ENA

Nostoc punctiforme PCC 73102

Project description:Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

| PRJNA183670 | ENA

Nostoc punctiforme PCC 73102

Project description:Comparative transcriptomics of wild-type (UCD 153) and patN-deletion strains (UCD 524) of Nostoc punctiforme ATCC 29133

| PRJNA173341 | ENA

Nostoc punctiforme PCC 73102

Project description:RNAseq analysis of the N. punctiforme transcriptome during hormogonium development

| PRJNA363067 | ENA

Identification of sesquiterpene synthases from Nostoc punctiforme PCC 73102 and Nostoc sp. strain PCC 7120.

Project description:Cyanobacteria are a rich source of natural products and are known to produce terpenoids. These bacteria are the major source of the musty-smelling terpenes geosmin and 2-methylisoborneol, which are found in many natural water supplies; however, no terpene synthases have been characterized from these organisms to date. Here, we describe the characterization of three sesquiterpene synthases identified in Nostoc sp. strain PCC 7120 (terpene synthase NS1) and Nostoc punctiforme PCC 73102 (terpene synthases NP1 and NP2). The second terpene synthase in N. punctiforme (NP2) is homologous to fusion-type sesquiterpene synthases from Streptomyces spp. shown to produce geosmin via an intermediate germacradienol. The enzymes were functionally expressed in Escherichia coli, and their terpene products were structurally identified as germacrene A (from NS1), the eudesmadiene 8a-epi-alpha-selinene (from NP1), and germacradienol (from NP2). The product of NP1, 8a-epi-alpha-selinene, so far has been isolated only from termites, in which it functions as a defense compound. Terpene synthases NP1 and NS1 are part of an apparent minicluster that includes a P450 and a putative hybrid two-component protein located downstream of the terpene synthases. Coexpression of P450 genes with their adjacent located terpene synthase genes in E. coli demonstrates that the P450 from Nostoc sp. can be functionally expressed in E. coli when coexpressed with a ferredoxin gene and a ferredoxin reductase gene from Nostoc and that the enzyme oxygenates the NS1 terpene product germacrene A. This represents to the best of our knowledge the first example of functional expression of a cyanobacterial P450 in E. coli.

| S-EPMC2546793 | biostudies-literature

Nostoc punctiforme PCC 73102 strain:ATCC 29133 | isolate:ATCC 29133

Project description:Nostoc punctiforme PCC 73102 methylation - NP-1 epigenomics

| PRJNA410629 | ENA