Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA sequencing reveals particulate matter exposure-induced cholesterol metabolism disorder in ferret lung epithelial cells

ABSTRACT: RNA sequencing reveals particulate matter exposure-induced cholesterol metabolism disorder in ferret lung epithelial cells

PROVIDER: PRJNA773397 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16522479_1.fastq.gz	Fastqsanger.gz
	SRR16522479_2.fastq.gz	Fastqsanger.gz
	SRR16522480_1.fastq.gz	Fastqsanger.gz
	SRR16522480_2.fastq.gz	Fastqsanger.gz
	SRR16522481_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

RNA sequencing reveals particulate matter exposure-induced cholesterol metabolism disorder in ferret lung epithelial cells

Project description:We report the biological effect of particulate matter on ferret lung epithelial cells with different concentration 500 ug/mL and 250 ug/mL. Treatment time is 48 h.

2021-10-28 | GSE186322 | GEO

Laurel (Laurus nobilis L.) transcriptomic response to urban particulate matter

Project description:This study aimed to shed light on the gene regulatory networks underlying plant leaf responses to air particulate matter. Our investigation focused on autochthonous shrubs of laurel (Laurus nobilis L.) grown in pots located in two contrasting areas: a highly polluted traffic road and rural countryside within the same town (Altopascio, Lucca, Italy). RNA-seq data were related to leaf morphological traits and air particulate matter, allowing to identify key players in modulating the capabilities of plants to phyllo-remediate high air particulate matter levels in urban environment.

2023-03-16 | E-MTAB-12332 | biostudies-arrayexpress

suspended particulate matter

Project description:suspended particulate matter Raw sequence reads

| PRJNA423140 | ENA

Particulate matter PM2.5

Project description:Particulate matter PM2.5 Raw sequence reads

| PRJNA772531 | ENA

Transcriptomic profile of blood cells exposed to particulate matter

Project description:Here we used next generation sequencing (NGS), to determine the transcriptional profile of blood cells exposed to particulate matter to contribute to the clarification of the importance of deregulated molecules in the molecular pathways involved in the inflammation. For this, blood cells from six adult healthy donors were treated with particulate matter.

2023-08-21 | GSE226707 | GEO

Transcriptional response of Photinia x fraseri to high levels of air particulate matter

Project description:This study aimed to shed light on the gene regulatory networks underlying plant leaf responses to air particulate matter. Our investigation focused on shrubs of Photinia x fraseri grown in pots located in two contrasting areas: a highly polluted traffic road and rural countryside within the same town (Altopascio, Lucca, Italy). RNA-seq data were related to leaf morphological traitsand air particulate matter, allowing to identify key players in modulating the capabilities of plants to phyllo-remediate high air particulate matter levels in urban environment.

2023-03-23 | E-MTAB-12477 | biostudies-arrayexpress

tendon mRNA seq after particulate matter inhalation

2022-08-03 | GSE200463 | GEO

Tendon methylation microarray after particulate matter inhalation

Project description:Open tenotomy of the Achilles tendon of 6 rats was performed. The animals were divided into two groups according to exposure of PM2.5 (particulate matter less than 2.5 µm): control group (Non-PM group) or PM exposure group (PM group). After 6 weeks of PM exposure, the tendon DNA was extracted and anlyzed. Genome-wide DNA methylation profiles were determinen. DNA amplicons were prepared using Differential Methylation Hybridization (DMH) method, subsequently hybridized on to the Customized Agilent Rat CpG island Microarray. The goal was to unravel the DNA methylation patterns in different subgropus of tendon tissue according to partciulate matter exposure.

2022-08-03 | GSE200709 | GEO

RNA sequencing of particulate metter treated melanocytes

Project description:Purpose: Determine the mechanism of particulate matter-induced signaling in melanocytes. Method: Primary human epidermal melanocytes were treated with particulate matter (5 μg/cm2) and incubated for 24 h. Total RNA (1 ug) from melanocytes were extracted and subjected to library synthesis. Results: Particulate matter-treated melanocytes exhibited upregulation of ER stress, unfolded protein response, and melanogenesis-related molecules. Conclusion: Particulate matter-induced melanocyte signaling was well evaluated using RNA sequencing.

2021-08-19 | GSE165333 | GEO

Hippocampus and cortex of mice exposed to urban particulate matter

Project description:Urban particulate matter (UPM) is known to be a risk factor for respiratory and cardiovascular diseases, but recent studies report that UPM exposure is associated with the development of brain disorders. In this study, we performed bioinformatic analysis to elucidate the molecular mechanisms of the effects of UPM exposure on the brain.

2024-01-09 | GSE252133 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data