Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenome bacterial biodiversity in Stem and Leaf of Eclipta prostrata,

PROVIDER: PRJNA774106 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16555327_1.fastq.gz	Fastqsanger.gz
	SRR16555327_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Project description:Metagenome fungal biodiversity in Stem and Leaf of Eclipta prostrata

| PRJNA773862 | ENA

Project description:Metagenome bacterial biodiversity in the roots of Eclipta prostrata,

| PRJNA774455 | ENA

Project description:Metagenome fungal biodiversity of Eclipta prostrata, Plant Root

| PRJNA774103 | ENA

Eclipta prostrata

Project description:Eclipta prostrata overview

| PRJNA643331 | ENA

Gene expression in C3 and C4 Atriplex leaves, roots, and stem, and C3xC4 F1 and F3 hybrid

Project description:Elucidating the genetic control of C3 and C4 photosynthesis. Atriplex rosea (C4) and Atriplex prostrata (C3) were at maturity to compare expression between C3 and C4 in leaves, stems, and roots. Their F1 hybrid leaf was studied at maturity and will aid in identifying regulatory elements involved in C3 and C4 leaf development. Two C3 Atriplex prostrata x C4 Atriplex rosea F3 hybrids (F3003 and F3036) were sequenced at a mature leaf stage.

2023-01-01 | GSE90100 | GEO

Gene expression in the development of C3 and C4 Atriplex and C3 Atriplex prostrata x C4 Atriplex rosea F1 hybrids

Project description:Elucidating the genetic control of development of C3 and C4 photosynthesis. Atriplex rosea (C4) and Atriplex prostrata (C3) were studied along a leaf developmental gradient to compare development between C3 and C4. C3 Atriplex prostrata x C4 Atriplex rosea F1 hybrid were studied along the same developmental gradient and will aid in identifying regulatory elements involved in C3 and C4 leaf development.

2023-01-01 | GSE89920 | GEO

Project description:Transcriptome of Eclipta prostrata after florpyrauxifen-benzyl

| PRJNA828110 | ENA

Project description:Whole Metagenome analysis of endophytic bacteria in Eclipta prostrata (L) L

| PRJNA950587 | ENA

Eclipta prostrata cultivar:wild

Project description:Tissue specific de novo transcriptome sequencing of Eclipta prostrata

| PRJNA992235 | ENA

Delayed leaf greening involves a major shift in expression of cytosolic and mitochondrial ribosomes to plastid ribosomes in the highly phosphorus-use-efficient Hakea prostrata (Proteaceae)

Project description:Hakea prostrata (Proteaceae) maintains a high photosynthetic rate at low leaf phosphorus and exhibits delayed leaf greening, a convergent adaptation found in many plant families where investment in photosynthetic machinery is delayed until after the leaf structure is built, saving on nutrient investment. To identify the dynamics of gene expression underlying delayed greening, we made a de novo transcriptome assembly for H. prostrata using roots and leaves from hydroponically grown plants, and leaves from five morphologically distinct stages of leaf development from wild plants. Abundance of unique transcripts was compared among the developing leaf stages to identify differentially expressed genes, which were separated into groups based on co-expression patterns. In general, transcripts encoding functions associated with leaf structure decreased in abundance across leaf development, with this concomitant with the decline in foliar P and N concentrations. An enrichment of differentially expressed genes associated with photosynthetic function increased in abundance at or after leaf expansion and much later in development than in species that do not have delayed greening. The abundance of transcripts encoding cytoplasmic and mitochondrial ribosomal subunits generally declined across leaf development, whilst transcripts encoding chloroplast ribosomal subunits increased. Taken together, these results indicate a clear shift in protein synthesis apparatus, moving from a leaf developmental stage and into the photosynthetically-active stage.

2024-08-06 | GSE217069 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data