Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The L1p/L10e-type protein DIP1 recruits the long noncoding RNA DANA1 and the PEAT complex to trigger histone deacetylation of drought responsive genes in Arabidopsis

ABSTRACT: The L1p/L10e-type protein DIP1 recruits the long noncoding RNA DANA1 and the PEAT complex to trigger histone deacetylation of drought responsive genes in Arabidopsis

PROVIDER: PRJNA774347 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16569023_1.fastq.gz	Fastqsanger.gz
	SRR16569023_2.fastq.gz	Fastqsanger.gz
	SRR16569025_1.fastq.gz	Fastqsanger.gz
	SRR16569025_2.fastq.gz	Fastqsanger.gz
	SRR16569026_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

The L1p/L10e-type protein DIP1 recruits the long noncoding RNA DANA1 and the PEAT complex to trigger histone deacetylation of drought responsive genes in Arabidopsis

Project description:DANA1 is a positive regulator of drought response and that DANA1 works jointly with the novel chromatin-related factor DIP1 to modulate the epigenetic reprogramming of the plant transcriptome during the response to drought.

2022-12-31 | GSE186546 | GEO

Genome-wide screening of drought-responsive long noncoding RNAs in rice

Project description:RNA-seq analyses of drought-treated rice leaves were performed to screen long noncoding RNAs showing differential expression in a time-dependent manner.

2019-10-16 | GSE121303 | GEO

LncRNA DANA1 promotes drought tolerance and histone deacetylation of drought responsive genes in Arabidopsis

Project description:Although many long noncoding RNAs have been discovered in plants, little is known about their biological function and mode of action. Here we show that the drought-induced long intergenic noncoding RNA DANA1 interacts with the L1p/L10e family member protein DANA1 INTERACTING PROTEIN 1 (DIP1) in the cell nucleus of Arabidopsis, and both DANA1 and DIP1 promote plant drought resistance. DANA1 and DIP1 increase histone deacetylase HDA9 binding to the CYP707A1 and CYP707A2 loci. DIP1 further interacts with PWWP3, a member of the PEAT complex that associates with HDA9 and has histone deacetylase activity. Mutation of DANA1 enhances CYP707A1 and CYP707A2 acetylation and expression resulting in impaired drought tolerance, in agreement with dip1 and pwwp3 mutant phenotypes. Our results demonstrate that DANA1 is a positive regulator of drought response and that DANA1 works jointly with the novel chromatin-related factor DIP1 on epigenetic reprogramming of the plant transcriptome during the response to drought.

| S-SCDT-10_1038-S44319-023-00030-4 | biostudies-other

Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

Project description:RNA-seq analyses of leaves from drought stressed rice plants was performed, producing differential expression profiles of genes containing coding RNAsand noncoding RNAs.

2017-02-14 | GSE80811 | GEO

Assessment Of Long Noncoding RNA CCAT1 In Colorectal Cancer Patients

Project description:1. Evaluate the diagnostic value of long noncoding RNA (CCAT1) expression by RT-PCR in peripheral blood in colorectal cancer patients versus normal healthy control personal. 2. Evaluate the clinical utility of detecting long noncoding RNA (CCAT1) expression in diagnosis of colorectal cancer patients & its relation to tumor staging. 3. Evaluate the clinical utility of detecting long noncoding RNA (CCAT1) expression in precancerous colorectal diseases. 4. Compare long noncoding RNA (CCAT1) expression with traditional marker; carcinoembryonic antigen (CEA) and Carbohydrate antigen 19-9 (CA19-9) in diagnosis of colorectal cancer.

| 2330122 | ecrin-mdr-crc

Genome-wide screening of drought-responsive long noncoding RNAs in rice

Project description:Genome-wide screening of drought-responsive long noncoding RNAs in rice

| PRJNA496614 | ENA

PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics

Project description:PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics

| PRJNA579165 | ENA

Long noncoding RNA CCTT recruits CENP-C to centromeres by directly binding to centromeric DNA

Project description:Long noncoding RNA CCTT recruits CENP-C to centromeres by directly binding to centromeric DNA

| PRJNA628989 | ENA

Long noncoding RNA CCTT recruits CENP-C to centromeres by directly binding to centromeric DNA [SHAPE-Map]

Project description:Long noncoding RNA CCTT recruits CENP-C to centromeres by directly binding to centromeric DNA [SHAPE-Map]