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ABSTRACT: Theristicus caerulescens (Plumbeous ibis) genome, bTheCae1

PROVIDER: PRJNA776872 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	JAJGSR01.dat.gz	Other
	JAJGSR01.fasta.gz	Fasta.gz
	JAJGSR01.master.dat	Other
	SRR25658739_1.fastq.gz	Fastqsanger.gz

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Project description:Theristicus caerulescens (Plumbeous ibis) genome, bTheCae1, sequence data.

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Project description:Root transcriptomes were sequenced using SOLiD 4 chemistry. The three accessions LC, GA and MP differed significantly in the expression of genes that contribute to metal ion transport and detoxification, stress tolerance and secondary metabolite biosynthesis. These data provide comprehensive genome-wide view to the root processes in several N. caerulescens accessions and highlight differences that potentially facilitate adaptation to various metalliferous soils. Comparison of three N. caerulescens accessions with contrasting metal accumulation and tolerance traits

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Project description:The leaf transcriptome of the nickel hyperaccumulator specie Noccaea caerulescens subsp. fimiensis living on serpentine soils were compared to the closely related non-nickel-accumulators Noccaea caerulescens "Viviez" growing on a zinc mining site and Noccaea montana living on serpentine soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

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Theristicus caudatus strain:NA

Project description:Theristicus caudatus

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Theristicus melanopis strain:NA

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Transcription profiling of Arabidopsis or Thlaspi caerulescens roots exposed to deficient, sufficient or excess zinc

Project description:A common reference model was used to design the microarray experiment, in which cDNA from T. caerulescens roots exposed to 100 uM (sufficient) zinc was used as the common reference. Every slide was always hybridized with the common reference sample and with a sample from one of the treatments (Arabidopsis or T. caerulescens exposed to deficient, sufficient or excess zinc). The common reference was labeled with the fluorescent dye Cyanine 3 (Cy3) and the treatment samples were labeled with Cyanine 5 (Cy5). As a quality control step we performed a dye-swap hybridization for one sample (from T. caerulescens roots exposed to sufficient zinc).

2006-10-10 | E-MEXP-877 | biostudies-arrayexpress

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