Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Acarospora socialis

ABSTRACT: Acarospora socialis overview

PROVIDER: PRJNA777338 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR23194838_1.fastq.gz	Fastqsanger.gz
	SRR23194838_2.fastq.gz	Fastqsanger.gz
	SRR23194839_1.fastq.gz	Fastqsanger.gz
	SRR23194839_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Acarospora socialis

Project description:Acarospora socialis Genomic Resources

| PRJNA777131 | ENA

Acarospora socialis

Project description:Acarospora socialis population sequencing and assembly

| PRJNA708330 | ENA

Acarospora socialis

Project description:Acarospora socialis Transcriptome or Gene expression

| PRJNA1013257 | ENA

Acarospora socialis

Project description:Acarospora socialis Genome sequencing and assembly

| PRJNA926642 | ENA

Acarospora socialis lichen metagenome

Project description:Microbial community associated with the lichen Acarospora socialis

| PRJNA1195573 | ENA

Acarospora socialis strain:JNA_AS_CCGP158

Project description:Acarospora socialis strain:JNA_AS_CCGP158 Genome sequencing and assembly

| PRJNA851476 | ENA

The reference genome assembly of the bright cobblestone lichen, Acarospora socialis.

Project description:Acarospora socialis, the bright cobblestone lichen, is commonly found in southwestern North America. This charismatic yellow lichen is a species of key ecological significance as it is often a pioneer species in new environments. Despite their ecological importance virtually no research has been conducted on the genomics of A. socialis. To address this, we used long-read sequencing to generate the first high-quality draft genome of A. socialis. Lichen thallus tissue was collected from Pinkham Canyon in Joshua Tree National Park, California and deposited in the UC Riverside herbarium under accession #295874. The de novo assembly of the mycobiont partner of the lichen was generated from Pacific Biosciences HiFi long reads and Dovetail Omni-C chromatin capture data. After removing algal and bacterial contigs, the fungal genome was approximately 31.2 Mb consisting of 38 scaffolds with contig and scaffold N50 of 2.4 Mb. The BUSCO completeness score of the assembled genome was 97.5% using the Ascomycota gene set. Information on the genome of A. socialis is important for California conservation purposes given that this lichen is threatened in some places locally by wildfires due to climate change. This reference genome will be used for understanding the genetic diversity, population genomics, and comparative genomics of A. socialis species. Genomic resources for this species will support population and landscape genomics investigations, exploring the use of A. socialis as a bioindicator species for climate change, and in studies of adaptation by comparing populations that occur across aridity gradients in California.

| S-EPMC10650946 | biostudies-literature

Acarospora sp.

Project description:Acarospora spp. Genomic Resources

| PRJNA766244 | ENA

Pluvianellus socialis strain:NA

Project description:Pluvianellus socialis

| PRJNA965426 | ENA

Prinia socialis strain:NA

Project description:Prinia socialis

| PRJNA965597 | ENA