Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genotypic and phenotypic characterization of lettuce bacterial pathogen Xanthomonas hortorum pv. vitians populations collected in Quebec, Canada

PROVIDER: PRJNA777907 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16772100_1.fastq.gz	Fastqsanger.gz
	SRR16772100_2.fastq.gz	Fastqsanger.gz
	SRR16772101_1.fastq.gz	Fastqsanger.gz
	SRR16772101_2.fastq.gz	Fastqsanger.gz
	SRR16772102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 192

Similar Datasets

Project description:Xanthomonas hortorum pv. vitians evolved strains sequencing

| PRJNA670409 | ENA

Xanthomonas hortorum pv. vitians strain:LM16734

Project description:Xanthomonas hortorum pv. vitians strain:LM16734 Genome sequencing

| PRJNA530964 | ENA

Xanthomonas hortorum pv. vitians strain:BLS9

Project description:Xanthomonas hortorum pv. vitians strain:BLS9 Genome sequencing

| PRJNA984756 | ENA

Xanthomonas hortorum pv. vitians strain:JSKH1901

Project description:Xanthomonas hortorum pv. vitians strain:JSKH1901 Genome sequencing and assembly

| PRJNA1031178 | ENA

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

Project description:Transcription profiling of the DSF regulon in Xanthomonas oryzae pv. oryzae (Xoo) using wild type and the rpfF mutant. Cell-cell signaling mediated by the quorum sensing molecule known as Diffusible Signaling factor (DSF) is required for virulence of Xanthomonas group of plant pathogens. DSF in different Xanthomonas and the closely related plant pathogen Xylella fastidiosa regulates diverse traits in a strain specific manner. The transcriptional profiling performed in this study is to elucidate the traits regulated by DSF from the Indian isolate of Xanthomonas oryzae pv. oryzae, which exhibits traits very different from other Xanthomonas group of plant pathogen. In this study, transcription analysis was done between a wild type Xanthomonas oryzae pv. oryzae strain and an isogenic strain that has a mutation in the DSF biosynthetic gene rpfF. Agilent one-color experiment, Organism: Xanthomonas oryzae, Agilent-025096 Genotypic Technology Pvt. Ltd. designed Custom Xanthomonas oryzae 8x15k, Labeling kit: Agilent Quick-Amp labeling Kit (p/n5190-0442).

2011-04-02 | E-GEOD-27809 | biostudies-arrayexpress

Xanthomonas hortorum

Project description:Xanthomonas hortorum overview

| PRJNA51275 | ENA

Project description:In planta Tn-seq of X. hortorum pv. vitians LM16734

| PRJNA726806 | ENA

Xanthomonas

Project description:Xanthomonas hortorum pathovars genome sequencing

| PRJNA525349 | ENA

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

2011-04-02 | GSE27809 | GEO

Transcriptional profiling of sweet orange leaves infected with Xanthomonas citri and Xanthomonas aurantifolii pathotype C

Project description:To compare the early transcriptional changes that occur in sweet orange leaves in response to Xanthomonas citri versus Xanthomonas aurantifolii pathotype C infection, plant leaves infiltrated with each bacterial pathogen were examined by RNAseq.

2022-05-11 | GSE202469 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data