Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Microbial metagenomics in different depths of South China Sea

PROVIDER: PRJNA77801 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR385732.fastq.gz	Fastqsanger.gz
	SRR385733.fastq.gz	Fastqsanger.gz
	SRR385734.fastq.gz	Fastqsanger.gz
	SRR385735.fastq.gz	Fastqsanger.gz
	SRR385736.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

marine sediment metagenome

Project description:Microbial community of deep sea sediment in South China Sea

| PRJNA360023 | ENA

marine metagenome

Project description:Microbial community isolated from South China Sea marine sediment

| PRJNA33581 | ENA

Metaproteomic analysis of viral concentrates reveals vertical shift of viral community and microbial metabolism in the ocean

Project description:Viral concentrates (VCs) contained both viral particles and cell-affiliated components. In this study, a shotgun metaproteomic approach was applied to characterize proteins in the VCs collected from chlorophyll maximum, mesopelagic (200 m) and bathypelagic (3000 m) waters in the South China Sea. Abundant viral proteins indicated the shift of viral community as depth. Whereas the remaining non-viral proteins suggested the diverse microbial metabolism distinct at different layers.

2022-01-19 | PXD020896 | Pride

marine sediment metagenome

Project description:bacterial coummunity of South China Sea

| PRJDB544 | ENA

Metabolic traits of size-fractionated microbial communities at an oceanic deep chlorophyll maximum waters revealed via metaproteomics

Project description:we applied metaproteomic approach to capture proteins from three size-fractionated microbial communities at the DCM in the basin of the South China Sea. The deep recovery of proteomes from a marine DCM plankton assemblage provides the highest resolution of metabolic activities as well as microbial niche differentiation, revealing a spectrum of biological processes carrying out by microbes at DCM of the SCS.

2020-12-21 | PXD016812 | Pride

marine metagenome

Project description:The South China Sea Targeted Locus (Loci)

| PRJNA207724 | ENA

marine metagenome

Project description:Bacterial community in the South China Sea

| PRJNA245375 | ENA

The microbial functional structure along the latitudinal gradient from the north to the south in China mainland as characterized by GeoChip

Project description:Understanding and quantifying the effects of environmental factors influencing the variation of abundance and diversity of microbial communities was a key theme of ecology. For microbial communities, there were two factors proposed in explaining the variation in current theory, which were contemporary environmental heterogeneity and historical events. Here, we report a study to profile soil microbial structure, which infers functional roles of microbial communities, along the latitudinal gradient from the north to the south in China mainland, aiming to explore potential microbial responses to external condition, especially for global climate changes via a strategy of space-for-time substitution. Using a microarray-based metagenomics tool named GeoChip 5.0, we showed that microbial communities were distinct for most but not all of the sites. Using substantial statistical analyses, exploring the dominant factor in influencing the soil microbial communities along the latitudinal gradient. Substantial variations were apparent in nutrient cycling genes, but they were in line with the functional roles of these genes. 300 samples were collected from 30 sites along the latitudinal gradient, with 10 replicates in every site

2015-05-23 | E-GEOD-69171 | biostudies-arrayexpress

Illuminating the metabolic activities of deep-sea microbes and their functional adaptation to the harsh nutritional conditions with metaproteomics

Project description:In the present study, we studied microbial composition and metabolic activity in the bathypelagic zone of the South China Sea. 12 samples were collected and subjected to metaproteomic analysis. Our data provide a novel view of the roles of two lifestyle prokaryotes and their link in substrate utilization in dark ocean.

2024-06-16 | PXD026838 | Pride

Metaproteomic analysis of microbial community structure and function in the South China Sea

Project description:In the present study, we studied microbial composition and metabolic activity in the euphotic zone of the South China Sea. 8 samples were collected and subjected to metaproteomic analysis. Our results suggested that mixotrophic phototrophs-driven NDL carbon fixation along with phytoplankton-driven NRL carbon fixation determined primary production in the oligotrophic ocean’s euphotic zone.

2024-06-16 | PXD018513 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data