Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: citrus callus RNA-sequencing

PROVIDER: PRJNA778304 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16874240_1.fastq.gz	Fastqsanger.gz
	SRR16874240_2.fastq.gz	Fastqsanger.gz
	SRR16874241_1.fastq.gz	Fastqsanger.gz
	SRR16874241_2.fastq.gz	Fastqsanger.gz
	SRR16874242_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Project description:citrus callus RNA-sequencing

| PRJNA901381 | ENA

Project description:RNA sequencing of citrus callus

| PRJNA783423 | ENA

Project description:citrus callus ChIP-sequencing

| PRJNA901543 | ENA

Project description:IAA treated citrus callus sequencing

| PRJNA483357 | ENA

Identification of microRNAs and their target genes in Moringa oleifera leaf and callus

Project description:This study aims to identify the differential expression of conserved and novel miRNAs and their target genes in M. oleifera leaf, callus and cold stress treated callus by high-throughput small RNA sequencing.

2018-08-31 | GSE119247 | GEO

Project description:RNA sequencing of grape fruit Red marsh(citrus paradisi Macf) callus

| PRJNA483358 | ENA

Uncover miRNAs in citrus fruit ripening

Project description:Fruit ripening in Citrus is not well understood at the molecular level. Knowledge of the regulatory mechanism of citrus fruit ripening at the post-transcriptional level in particular is lacking. Here, we comparatively analyzed the miRNAs and their targeted genes in a spontaneous late-ripening mutant, ?Fengwan? sweet orange (MT) (Citrus sinensis L. Osbeck), and its wild-type counterpart ('Fengjie 72-1', WT). Using high-throughput sequencing of small RNAs and RNA degradome tags, we identified 107 known and 21 novel miRNAs, as well as 225 target genes. A total of 24 miRNAs (16 known miRNAs and 8 novel miRNAs) were shown to be differentially expressed between MT and WT. The expression pattern of several key miRNAs and their target genes during citrus fruit development and ripening stages was examined. Csi-miR156k, csi-miR159 and csi-miR166d suppressed specific transcription factors (GAMYBs, SPLs and ATHBs) that are supposed to be important regulators involved in citrus fruit development and ripening. In the present study, miRNA-mediated silencing of target genes was found under complicated and sensitive regulation in citrus fruit. The identification of miRNAs and their target genes provide new clues for future investigation of mechanisms that regulate citrus fruit ripening.

2017-02-10 | GSE84191 | GEO

Gene expression altered by csi-miR156a overexpression in citrus callus

Project description:To investigate the global gene expression change caused by csi-miR156a overexpression which enhanced soamtic embryogenesis in citrus, we cpmpared gene expression profiles of trangenic and wild type callus prior to and at the stage of soamtic embryos presence (40 and 60 days after somatic embryos induction, referref to 40 and 60 DAI, respectively). A total of 3020 and 1452 differentially expressed genes were found between trangenic and wild type at 40 and 60 DAI, respectively. Our result indicated that csi-miR156a overexpression could cause large-scale gene expression alteration.

2018-03-31 | GSE98687 | GEO

Fracture callus from young and aged mice

Project description:Skeletal stem/progenitor cells are critical for fracture repair by providing osteochondro precursors in the callus, which is impaired in aging. However, the molecular signatures of callus skeletan progenitor cells during aging is not known. We performed single-cell RNA sequencing on CD45-CD31-Ter119- skeletan progenitor cells isolated from young and aged mouse calluses.

2022-04-01 | GSE199755 | GEO

Transcriptome analysis of Citrus reticulata ovule early development based on laser capture microdissection

Project description:Ovule developmental arrest is one of the early phenotypes of seed abortion. However, the molecular mechanism underlying ovule developmental arrest of citrus is still unclear. In this study, laser capture microdissection (LCM) was used to accurately divide the ovules of seedless Ponkan ‘Huagan NO.4’ (Citrus reticulata) (MT) and seeded Ponkan ‘Egan NO.1’ (Citrus reticulata) (WT) into nucellus and integument tissues. The captured tissues were used for subsequent RNA-seq. Moreover, single-molecule real-time (SMRT) sequencing was used to generate full-length transcripts of WT, which were used as reference transcripts for RNA-seq. These data can be utilized to analyse the causes of citrus seedlessness formation and the molecular regulatory network in the process of ovule abortion.

2024-09-01 | GSE183639 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data