Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Parent-of-origin DNA methylation in the bumblebee Bombus terrestris.

PROVIDER: PRJNA779586 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16915816_1.fastq.gz	Fastqsanger.gz
	SRR16915816_2.fastq.gz	Fastqsanger.gz
	SRR16915817_1.fastq.gz	Fastqsanger.gz
	SRR16915817_2.fastq.gz	Fastqsanger.gz
	SRR16915818_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Genome-wide identification of accessible chromatin regions in bumblebee by ATAC-seq

Project description:Bumblebees (Hymenoptera: Apidae) are important pollinating insects that play pivotal roles in crop production and natural ecosystem services. To achieve a comprehensive profile of accessible chromatin regions and provide clues for all possible regulatory elements in the bumblebee genome, we did ATAC-seq for Bombus terrestris samples derived from its four developmental stages: egg, larva, pupa, and adult, respectively. The sequencing reads of ATAC-seq were mapped to B. terrestris reference genome, and its accessible chromatin regions were identified and characterized using bioinformatic methods. Our study will provide important resources not only for uncovering regulatory elements in the bumblebee genome, but also for expanding our understanding of bumblebee biology.

2020-10-02 | GSE151858 | GEO

Bombus terrestris

Project description:Bombus terrestris parent of origin methylation analysis

| PRJNA573820 | ENA

Project description:DNA methylation extends lifespan in the bumblebee Bombus terrestris

| PRJNA1036551 | ENA

MiRNAs in the genomes of Bombus terrestris and Bombus impatiens

Project description:Our aims in this study were: 1) to identify the miRNAs of the bumble bees Bombus terrestris and B. impatiens; 2) to compare the total numbers of miRNAs between both bumble bee species and between them and the honey bee, Apis mellifera; and 3) to test whether the sequences and expression patterns of miRNAs were conserved between species. To investigate each of these aims we used miRNA-seq (deep sequencing of miRNA-enriched libraries) in B. terrestris, and bioinformatics prediction programs to identify miRNAs in both Bombus species. We identified 131 miRNAs in B. terrestris, and 114 in B. impatiens; of these, 17 were new miRNAs that had not previously been sequenced in any species. We found a striking level of difference in the miRNAs present between Bombus and A. mellifera, with 103 miRNAs in A. mellifera not being present in the genomes of the two bumble bees. miRNA profiles of Bombus terrestris at two developmental stages in larvae. This submission represents 'Bombus terrestris' component of study.

2015-03-06 | E-GEOD-64512 | biostudies-arrayexpress

iyBomTerr

Project description:Bombus terrestris (buff-tailed bumblebee)

| PRJEB45205 | ENA

Project description:Transcriptome analysis of bumblebee (Bombus terrestris)

| PRJNA907822 | ENA

Project description:Microbiome composition in bumblebee (Bombus terrestris)

| PRJNA907197 | ENA

MiRNAs in the genomes of Bombus terrestris and Bombus impatiens

2015-03-06 | GSE64512 | GEO

Gene expression differences underlying genotype-by-genotype specificity in a host-parasite system

Project description:Expression of bumblebees (Bombus terrestris) from four colonies exposed to 3 different genotypes of the trypanosome parasite Crithidia bombi

2014-04-28 | GSE55035 | GEO

Gene expression differences underlying genotype-by-genotype specificity in a host-parasite system

Project description:Expression of bumblebees (Bombus terrestris) from four colonies exposed to 3 different genotypes of the trypanosome parasite Crithidia bombi RNA from guts of exposed individuals. Sacrificed 18hr after exposure.

2014-04-28 | E-GEOD-55035 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data