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Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions

ABSTRACT: Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions

PROVIDER: PRJNA781662 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR16977205_1.fastq.gz	Fastqsanger.gz
	SRR16977205_2.fastq.gz	Fastqsanger.gz
	SRR16977206_1.fastq.gz	Fastqsanger.gz
	SRR16977206_2.fastq.gz	Fastqsanger.gz
	SRR16977207_1.fastq.gz	Fastqsanger.gz

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Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions

Project description:A total of 4388/4385 genes' transcripts (under aerobic/microaerobic condition, respectively) were identified. Among them, 105 and 71 transcripts were confidently determined to be up- or down-regulated by more than 4 folds with false discovery rate (FDR) p value more than 1, respectively. Additionally, 49 known regulatory non-coding small RNAs (sRNAs) were detected, and 18 sRNAs were differentially abundant (more than 1.5 fold-change). Functional characterizations were revealed that the major differential expression genes were involved in (i) acid response/cation homeostasis (ex: gadAXW, and hdeAB-yhiD operons), (ii) cell adhesion/biofilm formation (ex; fimAICDFGH, and csgDEFG operons), (iii) electron transportation (ex: cydAB, and nrdHIEF operons), (iv) ion transporter (ex: efeU, and efeOB operons), (v) Iron-sulfur cluster assembly (ex: iscRSUA and sufABCDSE operons), and (vi) the undoubtable anaerobic respiration/fermentation (ex: hyaABCDEF and hybOABCDEFG operons) & aerobic respiration (ex: sdhDAB and sucABCDSE operons).

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