Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DNA affinity purification sequencing of ClNAC56 and genomic DNA

ABSTRACT: DNA affinity purification sequencing of ClNAC56 and genomic DNA

PROVIDER: PRJNA782543 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17000700_1.fastq.gz	Fastqsanger.gz
	SRR17000700_2.fastq.gz	Fastqsanger.gz
	SRR17000701_1.fastq.gz	Fastqsanger.gz
	SRR17000701_2.fastq.gz	Fastqsanger.gz
	SRR17000702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)

Project description:In this study, we use DNA affinity purification sequencing to identiy genome-wide binding of LFY transcription factor, a master regulator of flower development in Arabidopsis. We generated two sets of data, one using genomic DNA from plant tissue, thus retain DNA methylation, as probe for DNA affinity purification (DAP-seq dataset), and the other using PCR amplified genomic DNA (without DNA methylation; AmpDAP-seq dataset).

2021-03-25 | GSE160013 | GEO

DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)

Project description:DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)

| PRJNA671605 | ENA

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Populus trichocarpa]

Project description:We applied multiplexed DNA affinity purification sequencing (multiDAP-seq) to profile the binding landscapes of 360 transcription factors (TFs) across ten flowering-plant genomes. Genomic DNA fragment libraries were assayed in 96-well plates against in vitro expressed HaloTag-fused TFs, generating nearly 3,000 genome-wide binding maps. These data provide a resource for identification of TF binding sites and comparative regulatory analyses, revealing deeply conserved TF-DNA interactions alongside lineage-specific rewiring events that underpin plant diversification. We also integreated these TF binding datasets with singe nuclei RNA-seq datasets produced from multiple tissues of five plant species to investigate the roles of TFs in driving cell type-specific gene expression patterns. The associated single nuclei RNA-seq datasets were submitted under BioProject ID PRJNA1262374.

2025-06-05 | GSE299008 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Capsella rubella]

2025-06-05 | GSE298997 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Oryza sativa]

2025-06-05 | GSE299004 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Brassica oleracea]

2025-06-05 | GSE298988 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Arabidopsis thaliana]

2025-06-05 | GSE298983 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Fragaria vesca]

2025-06-05 | GSE299001 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Solanum tuberosum]