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Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells [human]

ABSTRACT: Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells [human]

PROVIDER: PRJNA783216 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17027127_1.fastq.gz	Fastqsanger.gz
	SRR17027127_2.fastq.gz	Fastqsanger.gz
	SRR17027128_1.fastq.gz	Fastqsanger.gz
	SRR17027128_2.fastq.gz	Fastqsanger.gz
	SRR17027129_1.fastq.gz	Fastqsanger.gz

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Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells

Project description:Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells

| PRJNA783214 | ENA

Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells [mouse]

Project description:Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells [mouse]

| PRJNA783215 | ENA

Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells [human]

Project description:Mucosal-associated invariant T (MAIT) cells are a subpopulation of T lymphocytes that respond to microbial metabolites. We performed single-cell RNA sequencing and metabolic analyses in MAIT cell subsets in thymus and peripheral tissues from mice and humans to define the heterogeneity and developmental path of these innate-like lymphocytes. We show that the predominant mouse subset, which produces IL-17 (MAIT17), and the subset that produces IFN (MAIT1), have greatly different transcriptomes and metabolic states in the thymus and periphery. A subset has a transcriptome similar to circulating lymphocytes, and in mice these are found in recent thymic emigrants, suggesting partially mature cells emigrate from the thymus. Human MAIT cells are predominantly MAIT1 cells, but have a different metabolism from naïve CD8 T cells with increased fatty acid uptake and storage. Although mouse and human subsets are similar in thymus, in the periphery they are divergent, likely reflecting environmental and genetic differences.

2023-11-13 | GSE189483 | GEO

Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells [mouse]

2023-11-13 | GSE189484 | GEO

Transcriptomes and metabolism define heterogeneous mouse and human MAIT cells

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-11-13 | GSE189485 | GEO

CD5 levels define functionally heterogeneous populations of naïve human CD4+ T cells

Project description:CD5 levels define functionally heterogeneous populations of naïve human CD4+ T cells

| PRJNA625305 | ENA

Microarray expression profiling of MAIT subsets isolated from thymus of B6-MAIT/CAST mice, as compared to single positive CD4 or CD8 conventional T cells.

Project description:In mice, contrary to conventional T cells, MAIT cells acquire a memory phenotype in the thymus in relation with Zbtb16 expression (Savage et al., 2008 ; Koay et al., 2016). To define phenotypic transcriptional signatures of MAIT subsets in the thymus, we analyzed by microarray the transcriptome of MAIT1 (MR1tet+RORgt+) and MAIT17 (MR1tet+RORgt+) as compared to conventional mature (TCRb+CD24lo) CD4+ and CD8+ single positive cells.

2019-07-01 | E-MTAB-7702 | biostudies-arrayexpress

Gene expression profiles of MAIT cells, MAIT-iPSCs, hiPSCs, hESCs, and reMAIT cells

Project description:To show the similarity among MAIT-iPSCs, hiPSCs and hESCs and the gradual change of global gene expression of reMAIT cells along with differentiation, this experiment was designed. MAIT cells, MAIT-iPSCs, hiPSCs, hESCs, MAIT cells, and reMAIT cells at the several differerent stages of differentiation were collected. Then, they were applied in this experiment.

2013-03-21 | E-GEOD-44559 | biostudies-arrayexpress

Mapping H3K27ac in human MAIT cells

Project description:Mucosal associated invariant T (MAIT) cells, already differentiated and located at mucosal sites, are critical in the body’s first wave of defenses against invading pathogens. Bcl11b KO MAIT cells fail to be maintained both in the thymus and peripheral organs. Furthermore, MAIT cells fail to fully develop in the thymus without Bcl11b, failing to upregulate RORγt, and that phenotype remains in the lungs and livers of these mice. Bcl11b deletion in MAIT cells causes dramatic shifts in the activation and TH17 programs, due to the binding of Bcl11b in many of those genes, which we have seen in the human MAIT cells. MAIT cells rely on PLZF and RORγt for their development and function, while also heavily relying on Bcl11b. These data show the key interplay of Bcl11b with PLZF and RORγt in a T cell leading to its development and necessary function to protect the body against diseases.

2021-03-22 | GSE145777 | GEO

TCR and inflammatory signals tune human MAIT cells to exert specific tissue repair and effector functions

Project description:We sought to describe in detail human MAIT cell activation using a transcriptomic approach to define the basic transcriptome of MAIT cells in humans and to determine how this is modulated by activation. Fresh human peripheral blood cells were obtained from three donors, and were magnetically enriched on CD8+ cells, and flow-sorted for live CD161++TCR Va7.2+ MAIT cells. These were cultured in media for 20 hours (“unstimulated”) or in the presence of anti-CD3/CD28 TCR beads (T), cytokines (IL-12, 2ng/ml, IL-18, 50ng/ml, IL-15, 25ng/ml, and TL1A, 100ng/ml), or TCR beads and cytokines combined (TC).

2019-04-17 | GSE129906 | GEO

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