Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The complete chloroplast genome sequence of Ficus pandurata Hance var. angustifolia Cheng

PROVIDER: PRJNA783434 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17035630_1.fastq.gz	Fastqsanger.gz
	SRR17035630_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Differentiation of Ficus deltoidea varieties and chemical marker determination by UHPLC-HRMS metabolomics for establishing quality control criteria of this medicinal herb

Project description:Ficus deltoidea Jack (Moraceae) is a plant used in Malaysia for various conditions including as a supplement in diabetes management. Morphology distinction of the 7 varieties (var. angustifolia, var. bilobata, var. deltoidea, var. intermedia, var. kunstleri, var. motleyana and var. trengganuensis) is challenging due to the extreme leaf heterophylly and unclear varietal boundaries, making it difficult for authentication and quality control of F. deltoidea products. In this study, we applied untargeted UHPLC-HRMS metabolomics and a genetic approach to the authentication of 7 F. deltoidea varieties collected from 6 locations throughout Peninsular Malaysia. The PCA and HCA analysis showed 3 main chemotypes based on the differentiation in the main flavonoids content; var. terengganuensis and var. intermedia (chemotypes-a), var. angustifolia (chemotype-b) and var. bilobata, var. deltoidea, var. kunstleri and var. motleyana (chemotype-c). Using these groupings, the supervised PLS-DA analysis identified 15 glycosylated flavones as markers together with 1 furanocoumarin. These markers were always consistent for the respective varieties, regardless of the geographical origin and if the plants were of wild or cultivated. Additionally, the chemotaxonomy differentiation was also validated by DNA sequencing. In particular, var. bilobata accession which showed divergent morphology was also differentiated by the chemical fingerprints and genotype. Our results suggest that the chemotype differentiation based on the flavonoids fingerprints along with the proposed markers provide a complementary tool to morphology and genetic analyses for the quality control of raw materials and products from F. deltoidea varieties.

2019-01-18 | MTBLS756 | MetaboLights

Project description:The complete chloroplast genome sequence of Ehretia dicksonii Hance (Boraginaceae)

| PRJNA745580 | ENA

Project description:The complete chloroplast genome sequence of Lithocarpus litseifolius (Hance) Chun.

| PRJNA792474 | ENA

Project description:The complete chloroplast genome of Brachyscome angustifolia

| PRJNA825347 | ENA

Salix chienii

Project description:Salix chienii Cheng complete chloroplast genome sequencing and assembly

| PRJNA727759 | ENA

Project description:Complete chloroplast genome sequence of Iris lossii var. latifolia

| PRJNA1000243 | ENA

Project description:Characterization of the complete chloroplast genome of a subalpine deciduous shrub Lonicera angustifolia var. myrtillus (Caprifoliaceae)

| PRJNA691677 | ENA

Project description:Lindera angustifolia Chloroplast genome

| PRJNA790663 | ENA

Project description:The complete chloroplast genome sequence of Michelia cavaleriei var. platypetala

| PRJNA679088 | ENA

Project description:The complete chloroplast genome sequence of Cyperus malaccensis var. brevifolius

| PRJNA1005458 | ENA