Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mucilaginibacter roseus strain:LMG 28454

ABSTRACT: Mucilaginibacter roseus strain:LMG 28454 Genome sequencing and assembly

PROVIDER: PRJNA787290 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR23285933_1.fastq.gz	Fastqsanger.gz
	SRR23285933_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Mucilaginibacter pineti strain:47C3B | isolate:LMG 28160

Project description:Mucilaginibacter pineti 47C3B genome sequencing

| PRJNA322903 | ENA

Modestobacter roseus strain:1279

Project description:Modestobacter roseus strain:1279 Genome sequencing and assembly

| PRJNA578220 | ENA

Salinicoccus roseus strain:RF1H

Project description:Salinicoccus roseus strain:RF1H Genome sequencing and assembly

| PRJNA756885 | ENA

Putridiphycobacter roseus strain:SM1701

Project description:Putridiphycobacter roseus strain:SM1701 Genome sequencing and assembly

| PRJNA475323 | ENA

Imperialibacter roseus strain:P4T

Project description:Imperialibacter roseus strain:P4T Genome sequencing and assembly

| PRJNA1022829 | ENA

Salinicoccus roseus strain:W12

Project description:Salinicoccus roseus strain:W12 Genome sequencing and assembly

| PRJNA272357 | ENA

Lichenicoccus roseus strain:KEBCLARHB70R

Project description:Lichenicoccus roseus strain:KEBCLARHB70R Genome sequencing and assembly

| PRJNA543391 | ENA

Mucilaginibacter pedocola strain:TBZ30

Project description:Mucilaginibacter pedocola strain:TBZ30 Genome sequencing and assembly

| PRJNA331061 | ENA

Mucilaginibacter achroorhodeus strain:MJ1a

Project description:Mucilaginibacter achroorhodeus strain:MJ1a Genome sequencing and assembly

| PRJNA556538 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data