Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S rRNA V3-V4 amplicon sequencing of Holstein dairy cows rumen microbiota

PROVIDER: PRJNA787669 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17188400_1.fastq.gz	Fastqsanger.gz
	SRR17188400_2.fastq.gz	Fastqsanger.gz
	SRR17188401_1.fastq.gz	Fastqsanger.gz
	SRR17188401_2.fastq.gz	Fastqsanger.gz
	SRR17188302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 224

Similar Datasets

Project description:16S rRNA V3-V4 amplicon sequencing of Holstein dairy cows rumen microbiota

| PRJNA687592 | ENA

Project description:16S rRNA V3-V4 amplicon sequencing of Holstein dairy cows rumen microbiota

| PRJNA687778 | ENA

Project description:16S rRNA V3-V4 amplicon sequencing of Holstein dairy cows rumen microbiota

| PRJNA787670 | ENA

Project description:16S rRNA V3-V4 amplicon sequencing of incubated Holstein dairy cows rumen microbiota

| PRJNA972255 | ENA

Targeting the treponemal microbiome of digital dermatitis infections by deep coverage pyrosequencing

Project description:We examined 36 biopsies taken from digital dermatitis lesions of Holstein cows. The target was the V3 -V4 variable region of 16S rRNA using Treponema specific primers. We identified 20 different taxa of Treponema using this approach.

2013-06-25 | GSE42426 | GEO

Targeting the treponemal microbiome of digital dermatitis infections by deep coverage pyrosequencing

2013-06-25 | E-GEOD-42426 | biostudies-arrayexpress

First exploration of the altered microbial gut-lung axis in the pathogenesis of human refractory chronic cough

Project description:v3-v4 16S rRNA sequencing was used to characterize both gut and oral microbiota composition of RCC (refractory chronic cough) patients and matched healthy controls (HC). The groups are matched in age and gender.

2024-04-17 | GSE240646 | GEO

High-concentrate feeding upregulates the expression of inflammation-related genes in the ruminal epithelium of dairy cattle

Project description:The objective of this study was to characterize the mRNA expression profile in rumen epithelium from Holstein dairy cows fed high or low concentrate dits.

2016-06-06 | GSE82272 | GEO

A comparative mRNA-seq profiling of the liver, rumen villi, mammalian gland and kidney of Holstein dairy cows with high vs normal milk-urea excretion and with low vs normal (control) crude protein intake

Project description:Nitrogen (N) emissions became a huge topic under environmental and nutrient concerns in dairy farming. Nitrogen is metabolized in cows as a consequence of feed crude protein digestion which is either recycled or excreted via urine, faeces and/or milk. In dairy cows differences between cows in N-recycling and N-emissions have been postulated. This study investigated 24 Holstein dairy cows in late lactation. The experimental design comprises two dietary groups (low (LP) vs normal (NP) crude protein) and two groups of milk urea content, high (HMU) vs low (LMU). Transcriptomic profiles of the liver, rumen, mammalian gland and kidney tissues were comparatively assessed by mRNA sequencing.

2024-11-30 | E-MTAB-9901 | biostudies-arrayexpress

Evaluating the gut microbiota shifts caused by two diets based on ancient grains

Project description:Total DNA was extracted from stool specimens, amplified to collect amplicons of variable V3–V4 regions of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform.

2022-08-24 | GSE206807 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data