Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome of a virulent genotype IX African swine fever virus isolate from Kenya

PROVIDER: PRJNA788740 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17226616_1.fastq.gz	Fastqsanger.gz
	SRR17226616_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Project description:CRISPR/Cas9 editing of genotype IX African swine fever virus

| PRJNA747972 | ENA

African swine fever virus tropism for different organ tissues and host transcriptomic responses in experimentally infected pigs

Project description:Purpose: This goal of this study was to explore the host transcriptomic responses in African swine fever virus experimentally infected pigs using RNA-Sequencing. Methods: RNAs acquired from ten different organ tissue samples were sequenced. Sequencing reads were preprocessed, aligned with the reference genome, assembled and expressions were estimated through bioinformatics approaches. Result: Several uprugulated DEGs were identified. Conclusion: We found important candidate genes and pathways for further testing in African swine fever virus infection in pig.

2023-04-23 | GSE230340 | GEO

Nine complete genomes of ASFV gen IX viruses

Project description:Complete genome sequencing and comparative phylogenomics of multiple African swine fever virus (ASFV) field isolates of the virulent East African p72 genotype IX viruses

| PRJEB70459 | ENA

Project description:African swine fever virus

| PRJNA744632 | ENA

Project description:African Swine Fever Virus

| PRJNA704953 | ENA

Project description:African swine fever virus

| PRJNA754798 | ENA

Host transcriptome determinants for African Swine Fever (ASF)

Project description:In field studies and carefully controlled artificial infections, there is host variation in response to ASF infections. To better understand the mechanisms underlying this diversity and distinguish between resilient and susceptible pigs to African Swine Fever (ASF), the differentially expressed genes (DEGs) were studied between the recovered versus non-recovered pigs before and after an infection challenge and also among non-recovered animals over time. In total, 17 Babraham pigs were sampled. Twelve animals were randomly immunized with low virulent ASFV isolate, and the others received the sham vaccine. All animals were then challenged with the virulent ASFV isolate 18 days after the immunization. Except for five animals, all showed clinical signs and dead between 4 and 6 days later. RNA sequencing was done for whole blood samples collected pre-infection, one day, and one week post-infection.

2023-02-17 | E-MTAB-12608 | biostudies-arrayexpress

African swine fever virus

Project description:African swine fever virus Genome sequencing

| PRJNA776429 | ENA

African swine fever virus

Project description:African Swine Fever Virus Genome Sequencing

| PRJNA983205 | ENA

African swine fever virus

Project description:Nigerian African swine fever virus genome

| PRJNA1058160 | ENA