Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Inoculation diesel contaminated soil

ABSTRACT: Inoculation diesel contaminated soil Metagenome

PROVIDER: PRJNA791149 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17333500.fastq.gz	Fastqsanger.gz
	SRR17333501.fastq.gz	Fastqsanger.gz
	SRR17333502.fastq.gz	Fastqsanger.gz
	SRR17333503.fastq.gz	Fastqsanger.gz
	SRR17333504.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 21

Similar Datasets

diesel contaminated soil with compost amendment

Project description:diesel contaminated soil with compost amendment Metagenome

| PRJNA768282 | ENA

diesel contaminated soil with Pseudomonas sp. DTF1

Project description:diesel contaminated soil with Pseudomonas sp. DTF1 Metagenome

| PRJNA803940 | ENA

Bacterial community of bioremediation in diesel-contaminated soil

Project description:Bacterial community of bioremediation in diesel-contaminated soil Metagenome

| PRJNA923456 | ENA

Bacterial community in soils contaminated with diesel

Project description:Bacterial community in soils contaminated with diesel Metagenome

| PRJNA608545 | ENA

Genome-wide transcriptional changes of Sphingomonas wittichii RW1 during inoculation and growth in contaminated sand [experment 2]

Project description:The efficacy of inoculation of single pure bacterial cultures into complex microbiomes, for example, in order to achieve increased pollutant degradation rates in contaminated material (i.e., bioaugmentation), has been frustrated by insufficient knowledge on the behaviour of the inoculated bacteria under the specific abiotic and biotic boundary conditions. Here we present a comprehensive analysis of global gene expression of the bacterium Sphingomonas wittichii RW1 in contaminated sand, compared to regular suspended batch growth in liquid culture. RW1 is a well-known bacterium capable of mineralizing polycyclic aromatic hydrocarbons such as dioxins, dibenzofurans and other chlorinated congeners. We tested the reactions of the cells both during the immediate transition phase from liquid culture to sand with or without dibenzofuran, as well during growth and stationary phase in sand. Cells during transition resemble going through stationary phase, showing evidence of stress responses and nutrient scavenging, and even of major adjustments in their primary metabolism if they were not pre-cultured on the same contaminant as found in the soil. Cells growing and surviving in soil show very different signatures as in liquid or in liquid culture exposed to chemicals inducing drought stress, and we obtain evidence for numerous soil-specific expressed genes. We conclude that studies focusing on inoculation efficacy should test behavior under conditions as closely as possible mimicking the intended microbiome conditions

2014-06-23 | GSE54815 | GEO

Genome-wide transcriptional changes of Sphingomonas wittichii RW1 during inoculation and growth in contaminated sand [experiment 1]

2014-06-23 | GSE54814 | GEO

Bacterial community of phytoremediation in diesel-contaminated soil cultivated with maize

Project description:Bacterial community of phytoremediation in diesel-contaminated soil cultivated with maize Metagenome

| PRJNA923459 | ENA

bacterial community structure in diesel-contaminated and tall fescue-planted soil

Project description:bacterial community structure in diesel-contaminated and tall fescue-planted soil Metagenome

| PRJNA792415 | ENA

diesel oil-contaminated sea water

Project description:diesel oil-contaminated sea water Raw sequence reads

| PRJNA658464 | ENA