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The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [I]

ABSTRACT: The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [I]

PROVIDER: PRJNA792079 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17327160.fastq.gz	Fastqsanger.gz
	SRR17327161.fastq.gz	Fastqsanger.gz
	SRR17327162.fastq.gz	Fastqsanger.gz
	SRR17327163.fastq.gz	Fastqsanger.gz
	SRR17327164.fastq.gz	Fastqsanger.gz

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The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation

Project description:The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation

| PRJNA792075 | ENA

The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [II]

Project description:The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [II]

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The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [II]

Project description:To screen the potential targets of Salmonella 3’ UTR derived sRNA FadZ, we compared global mRNA profiles in FadZ-deficient and -pulse expressed strains. The 40-nt FadZ sequences was cloned onto a plasmid downstream of the pBAD promoter and expression was induced by L-arabinose for 10-min in LB broth. Transcriptomic profiles were compared with strain carrying the empty control plasmid.

2021-12-27 | GSE192570 | GEO

The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation [I]

Project description:To unfold the potential links between Salmonella fatty acid oxidation and other metabolic pathways, we performed RNA-seq to draw the transcriptomic response of Salmonella in response to oleci acid treatment. We compared samples of oleic acid shock (Group OAS) and oleic acid growth (Group OAG) to glucose growth (Group GLU).

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The short 3’ UTR derived sRNA FadZ buffers the transcriptional fluctuations during fatty acid oxidation

Project description:This SuperSeries is composed of the SubSeries listed below.

2021-12-27 | GSE192571 | GEO

Transcriptome analysis of total RNA from the Rhodobacter sphaeroides 2.4.1 UdsC (sRNA) deletion mutant strain and UdsC (sRNA) overexpression strain under microaerobic growth conditions

Project description:The sRNA UdsC ist derived from the 3´ UTR of RSP_7527. To analyse the effect of the sRNA on the transcriptome of R. sphaeroides we performed the RNAseq analysis with a chromosomal knockout and an inducible overexpression of this sRNA.

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Project description:ArgR and the sRNA from its 3’UTR, ArgX, both regulate the arc operon by influencing transcription and RNA stability/translation respectively

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A rhlI 5’ UTR-derived sRNA regulates RhlR-dependent quorum sensing in Pseudomonas aeruginosa

Project description:A rhlI 5’ UTR-derived sRNA regulates RhlR-dependent quorum sensing in Pseudomonas aeruginosa

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RNase III processed sRNA modulates in vivo colonization of Salmonella enterica through regulation of N-acetylmannosamine metabolism

Project description:To investigate the molecular phenotype for 3’UTR derived sRNA ManS from S.Typhimurium STM1128 mRNA during ManNAc metabolism, we conducted mass spectrometry-based proteomics with both wild-type and ManS-deleted strains to check the differences.

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The conserved 3’ UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration

Project description:In pursuit of a biological role of Salmonella 3' UTR derived sRNA NarS ,we sought to determine potential target mRNAs of NarS under anaerobic conditions. To this end, we compared gene expression in NarS-deficient and NarS overexpression (from plasmid pPL-NarS) strains following a 30-minute anaerobic shock by RNA-seq.

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