Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole genome re-sequencing of rice USDA mini-core collection

PROVIDER: PRJNA792623 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17344200_1.fastq.gz	Fastqsanger.gz
	SRR17344200_2.fastq.gz	Fastqsanger.gz
	SRR17344300_1.fastq.gz	Fastqsanger.gz
	SRR17344300_2.fastq.gz	Fastqsanger.gz
	SRR17344201_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 402

Similar Datasets

Glycine max strain:cultivar

Project description:Whole-genome re-sequencing of the soybean mini-core collection.

| PRJDB7786 | ENA

Glycine max

Project description:Whole Genome Sequencing of the soybean mini-core collection

| PRJDB7386 | ENA

Glycine max strain:mini core-collection

Project description:Target re-sequencing for flowering time related genes in soybean mini core-collection

| PRJDB7633 | ENA

Project description:World Vegetable Center Mini Core Collection - DartSeq

| PRJNA645721 | ENA

Oryza sativa

Project description:Genome sequence of rice core collection (WRC)

| PRJDB8159 | ENA

Oryza sativa

Project description:Genome sequence of rice core collection (JRC)

| PRJDB10281 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

de novo re-construction of the core genome from ChIP-Seq for large-genome organisms

Project description:Genetic diversity in plants is remarkably high. Recent whole genome sequencing (WGS) of 67 rice accessions recovered 10,872 novel genes. Comparison of the genetic architecture among divergent populations or between crops and wild relatives is essential for obtaining functional components determining crucial traits. However, many major crops have gigabase-scale genomes, which are not well-suited to WGS. Existing cost-effective sequencing approaches including re-sequencing, exome-sequencing and restriction enzyme-based methods all have difficulty in obtaining long novel genomic sequences from highly divergent population with large genome size. The present study presented a reference-independent core genome targeted sequencing approach, CGT-seq, which employed epigenomic information from both active and repressive epigenetic marks to guide the assembly of the core genome mainly composed of promoter and intragenic regions. This method was relatively easily implemented, and displayed high accuracy, sensitivity and specificity for capturing the core genome of bread wheat. 95% intragenic and 89% promoter region from wheat were covered by CGT-seq read. We further demonstrated in rice that CGT-seq captured hundreds of novel genes and regulatory sequences from a previously unsequenced ecotype. Together, with specific enrichment and sequencing of regions within and nearby genes, CGT-seq is a time- and resource-effective approach to profiling functionally relevant regions in sequenced and non-sequenced populations with large genomes.

2018-05-27 | GSE107827 | GEO

Oryza sativa

Project description:Genome sequence of rice new core collection (Aus)

| PRJDB8362 | ENA

Project description:Genomic characterization of USDA-NPGS Sudanese sorghum core collection

| PRJNA565973 | ENA